Amphiprion ocellaris (clown anemonefish): 111583816
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Entry
111583816 CDS
T06018
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111583816 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aoce03041
]
111583816 (sf3b1)
03036 Chromosome and associated proteins [BR:
aoce03036
]
111583816 (sf3b1)
Spliceosome [BR:
aoce03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
111583816 (sf3b1)
Complex B
111583816 (sf3b1)
Complex C
U2 SnRNP specific factors
111583816 (sf3b1)
Chromosome and associated proteins [BR:
aoce03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
111583816 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
111583816
NCBI-ProteinID:
XP_023148826
Ensembl:
ENSAOCG00000004478
LinkDB
All DBs
Position
11:complement(35888236..35915724)
Genome browser
AA seq
1315 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKASLLEEGEQGVGLDSTGFYDQEIYGGNDSRFAGYVTSI
AANEQEDDDEDDTSTSLLGPKKPGYHAPVAILNAIPQSDEQYDPFAEHRPQKIAEREDEY
KARRRQMIISPERLDPFADGGKTPDPKLQVRSYVDVMLEQNLSKEEREIRQQLAEKAKSG
DLKAVNGSAASQAAVAKRKRRWDQTADQTPSNATPKKMSSWDQADASAETPGHTPAHTPS
NSRWDETPGRPKGSETPGATPSSRMWDPTPSHTPAGAATPGRDTPGHATPGHGGATGSVR
KNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETPASQMGSS
TPLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDEELDAMFP
EGYKVLPPPAGYVPIRTPARKLSATPTPIGGMTGFHMQAEDRTTKQMNDQPSGNLPFLKP
DDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAG
PLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYA
RVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLK
AVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAI
AALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREV
MLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRN
YRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLE
EQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQ
QAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKM
TPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAH
KKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVL
PALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAS
AVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQY
CLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQVYNDDKNVYVRYELEYVL
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacgcacgaagacatcgaggcccagatcctggagatccagggg
atgaaggcctcgctgctggaggagggcgagcagggagtgggcctggactctacgggcttc
tacgaccaggagatctacggcggcaacgacagtcgctttgccggatacgtgacttccatc
gctgccaacgaacaggaagatgacgatgaagacgacacgtcgaccagcctgctgggaccg
aagaaaccagggtaccacgctccagtggcaatactcaacgccattcctcagtcagacgag
cagtatgacccgtttgcggagcatcgtccccagaagatcgcagagcgggaggatgaatat
aaagcccggcgcagacagatgatcatctctccggagcgtctcgacccgtttgcagacgga
ggcaaaactccggaccccaagctgcaggtcaggtcgtacgtggacgtcatgttggagcag
aacctgtccaaggaggagagagagatccgtcagcagctggcagagaaggccaagtcaggg
gacctgaaagctgtcaacggttccgctgcttcacaagctgctgtcgctaaacgcaaacgc
cgctgggaccagacagctgaccaaactccctccaacgccacgcccaaaaagatgtccagc
tgggaccaagctgacgcctctgctgagactccaggacacacacctgctcacacaccttca
aacagccgatgggatgagacccccggccgccctaaaggcagcgagacccccggggccacg
cccagcagccgcatgtgggaccccacccccagccacacgcccgcaggtgcagccacacct
ggcagggacacacctggacatgccacgccgggccacggcggggccacgggaagcgtccgc
aagaaccgctgggacgagacccccaaaacagagagggagacccccggacacggcagcggc
tgggcagagaccccccggacagaccgaggagacgagtcggtgggagagactccgactcca
ggagccagtaagaggaagtccaggtgggacgaaacacctgccagtcagatgggatcctca
acgccactcctgacccccgggaagacccccatagggacccccgctatgaacatggccacc
ccaaccccaggtcacctgatgagcatgactccagagcagctgcaggcctggaggtgggag
cgagagattgatgagaggaaccggcctctgacagatgaggagctggacgccatgttcccc
gagggctacaaggtcctgcctcctccagcgggttacgtaccgatccgtactccggcccgg
aagctgtcggcgacacccacgccgatcggaggcatgacgggtttccacatgcaggccgaa
gaccgaaccaccaagcagatgaacgaccagccgtcaggaaacctccccttcctcaaacct
gacgacatccagtactttgacaagctgctggtggaggtcgacgagtccacgctgagcccc
gaggagcagaaagaacgcaagatcatgaagctgctgctgaagatcaagaacgggactcca
cccatgaggaaggccgctctgcgtcagatcaccgataaggcccgtgagttcggggcaggg
ccgctgttcaaccagattctgccgctgcttatgtcgcccacactggaggaccaggagcgc
cacctgctggtcaaagtcatcgaccgcatcctctacaagctggacgacctggtccggccg
tacgtccacaagatcctggtggtgatcgagccgctgctgattgatgaggattattatgcc
agagtagaaggcagagagatcatctccaacctggctaaggcggctggtttggccaccatg
atctccaccatgcgtcccgatatcgacaacatggacgagtacgtcagaaacacgacggcc
cgagccttcgccgtggtggcctcggccctcggcatcccgtccctgctgcccttcctcaaa
gctgtgtgcaagagcaagaagtcctggcaggccagacacactggcatcaagatcgtgcag
cagatcgccatcctgatgggctgcgctatcctgcctcacctccgcagcctggtggagatc
atcgaacacggtctggtggacgagcagcagaaggttaggaccatcagtgctctggctatc
gctgccctggctgaagctgcaacgccgtacggcatcgaatccttcgactcggtcctgaag
ccgctgtggaaaggcatcaggcagcacagaggaaagggtctggctgccttcctcaaagct
atcggttatctgatccctctgatggacgctgagtacgctaactactacaccagggaggtg
atgctgatcctcatcagagagttccagtctcctgacgaggagatgaagaagatcgtactg
aaggtggtgaagcagtgctgtggcaccgacggagtggaagcaaactacatcaagactgag
atcctgccgccgttcttcaaacacttctggcagcacaggatggctctggacagacgcaac
tacagacagctggtagacaccacggtggagctggccaataaagtgggagcagcagagatc
atttctcgcatcgtggacgacctgaaggacgaggctgagcagtacagaaagatggtgatg
gagaccatcgagaagatcatgggcaacctgggcgctgccgacatcgaccacaagctggag
gagcagctgatcgacggcatcctgtacgccttccaggagcagaccactgaggactccgtg
atgctgaatgggttcggtaccgtggtgaacgccctcgggaagcgagtcaagccctacctg
cctcagatctgtggtaccgttctctggcgtctcaacaacaagtcagctaaagtccgtcag
caggcggccgacctgatctccagaaccgccgtggtgatgaagacctgccaggaggagaaa
ctgatgggtcacctgggggtagttctgtatgagtacctgggagaggagtaccctgaggtc
ctgggcagcatcctgggagctctgaaggccattgtcaacgtcattggaatgcacaagatg
actccaccaatcaaagacctgcttccccgtctgacgcccatcctgaagaaccgacatgag
aaggtccaggagaactgcatcgacctggtgggaaggatcgccgacaggggagctgagtac
gtgtcggccagggagtggatgaggatttgtttcgagctgctggagctgctcaaagctcac
aagaaggcgatccgtagagccaccgtcaacacgtttggctatatcgctaaagccatcggg
cctcacgacgtcttggcaactctgctgaacaacctgaaggttcaggagcgtcagaaccgg
gtctgcacgaccgtggccatcgccatcgtggccgagacctgctccccgttcacggttctg
ccggccctcatgaatgagtaccgagtccctgaactcaatgtccagaacggcgtcctcaag
tcgctatccttcctgttcgagtacatcggagagatgggcaaagactacatctacgccgtg
acgccgctgctggaggacgcgctcatggacagagacctggtccaccggcagacggccagc
gctgtggtccaacacatgtctctgggcgtgtacggcttcggctgtgaggattctctgaac
cacctgctgaactacgtctggcccaacgtgttcgagacgtctcctcacgtcatccaggcc
gtgatgggagctctggaggggctgagggtcgccatcggaccctgtcgcatgctgcagtac
tgcctccagggtctgttccatccggccaggaaggtgagggatgtttactggaagatctac
aactccatctacatcggctctcaggacgctctgatcgctcactacccgcaggtctacaac
gacgacaagaacgtgtacgttcgctacgagctggagtacgtcctgtaa
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integrated database retrieval system
