Amphiprion ocellaris (clown anemonefish): 111584012
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Entry
111584012 CDS
T06018
Symbol
smarcb1a
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03082
ATP-dependent chromatin remodeling
aoce03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111584012 (smarcb1a)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
111584012 (smarcb1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
aoce01009
]
111584012 (smarcb1a)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aoce03021
]
111584012 (smarcb1a)
03036 Chromosome and associated proteins [BR:
aoce03036
]
111584012 (smarcb1a)
Protein phosphatases and associated proteins [BR:
aoce01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
111584012 (smarcb1a)
Transcription machinery [BR:
aoce03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
111584012 (smarcb1a)
SWI/SNF complex
111584012 (smarcb1a)
Chromosome and associated proteins [BR:
aoce03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
111584012 (smarcb1a)
PBAF complex
111584012 (smarcb1a)
SWI/SNF complex
111584012 (smarcb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
111584012
NCBI-ProteinID:
XP_023149032
Ensembl:
ENSAOCG00000022222
LinkDB
All DBs
Position
6:complement(3124193..3135467)
Genome browser
AA seq
373 aa
AA seq
DB search
MALSKTFGQKPVKFQLEEDGDFYMIGSEVGNYLRMFRGSLYKRYPSLWRKLASVEERKKI
VESSHDHGYTQLATSVTLLKASEVEEILEGNDEKYKAVSISTEPPAYLREQKAKRNSQWV
PTLPNSSHHLDAVPCSTTINRSRLGRDKKRTFPLCFDDHDPAVIHENATQSEVLVPIRLD
MEIEGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPTDS
ILEDQTDQRVIIKLNIHVGNISLVDQFEWDMSERENSPEKFALKLCSELGLGGEFVTTIA
YSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNT
RRMRRLANTAPAW
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atggcgcttagcaaaacgtttggacaaaaaccggtcaaattccagctcgaggaggatgga
gacttttacatgatcggatcggaggtgggaaactacctccgtatgttcagaggctcgctg
tataaaagatacccgtcactatggaggaaactggcctcggtagaagagcggaagaaaata
gtggaatcatcacacgatcacggctacactcagctggccaccagcgtgactctgctgaag
gcttcagaggtggaagagatcctggagggaaacgatgagaagtacaaagctgtttccatc
agtactgaacctcccgcctacctcagggaacagaaggcgaagaggaacagccagtgggtt
ccaacgctgcccaacagttctcatcacctggacgctgttccatgttctaccaccatcaac
cgaagccgactgggccgagataagaagaggaccttccccctgtgcttcgacgaccacgat
cctgctgtgatccatgaaaacgccactcagtctgaagttctggttccgatccgtctggac
atggagatcgagggccagaagctccgagacgctttcacctggaatatgaacgagaagctc
atgacgcccgagatgttcgctgagatcctgtgtgacgacctggacctgaacccgctggcc
ttcgtccccgccatcgcctcggccatccggcagcagatcgagtcgtatcccacagacagc
atcctggaggaccagacggaccagagggtcatcatcaagctcaacatccacgtggggaac
atctctctggtggaccagttcgagtgggacatgtccgagagggagaattctccggagaag
ttcgccctgaagctctgctctgagctcggtctgggaggagagttcgtcaccaccatcgcc
tacagcatccgaggacaactgagctggcaccagaggacgtacgccttcagtgagaacccg
ctgcccacggtggagatcgccatcaggaacacgggagacgccgaccagtggtgccccctg
ctggagacgctgaccgacgccgagatggagaagaagatcagagaccaggacagaaacacg
aggcggatgcgacggttggccaacacggctcctgcctggtag
DBGET
integrated database retrieval system
