Amphiprion ocellaris (clown anemonefish): 111584950
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Entry
111584950 CDS
T06018
Symbol
cdc40
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111584950 (cdc40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aoce03041
]
111584950 (cdc40)
Spliceosome [BR:
aoce03041
]
Complex C
Other components
Step II factors
111584950 (cdc40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WDR55
EIF3I
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_TEP1_C
Beta-prop_SPT8
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_NWD2_C
WD_LRWD1
Beta-prop_Vps41
PQQ_2
Motif
Other DBs
NCBI-GeneID:
111584950
NCBI-ProteinID:
XP_023150081
Ensembl:
ENSAOCG00000011041
LinkDB
All DBs
Position
12:complement(2947391..2971905)
Genome browser
AA seq
581 aa
AA seq
DB search
MAASVSSLVSYGSDSDSENESESVTGAEKVTPVDPDATAHLKPLQSAPTMSVAVLNSAPE
VAVKESVETGTHLDPSLKEVTYNPTFETMFAPEFGPVNPFKSQQMAAPRNMLSGYAEPAH
VNDFMFEQQRRTFSTYGYALDPSVDTHQASSNTYIGAVDEAEKNKGLTVFETGHKKSEKR
KKLKGGDAGEIDNFLGPWAKYVDEKDVAKPSEDEQKELDEITAKRQKKGRNEEDAPADEK
TILHVKDMYDYQGRSYLHVPQDVGINLRSADAPDKCYLPKKQIHVWSGHTKGVSAIRLFP
NSGHLLLSCSMDCKIKLWEVYGERRCIRTFIGHSKAVRDICFNNTGTQFLSAAYDRYLKL
WDSETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRTGEVVQEYDRHL
GAVNTITFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLAC
QSMDNQILIFGAQNRFRLNKKKVFKGHMVAGYACQVDFSPDMSYVVSGDADGKLNIWDWK
TTKLYHRIKAHDKVCISALWHPHETSKVITCGWDGQIKLWD
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atggctgcctccgtatcttccctcgtttcgtacggcagcgattcagactcagaaaatgag
tctgaatctgttaccggtgccgagaaagtgactccggtggacccggacgctacggctcac
cttaaacctctgcagtctgcgcccacaatgtctgtggctgttcttaattctgccccggag
gtcgctgttaaggaatccgttgagactggcacacacctggacccatcgttgaaagaagtc
acttacaacccaacatttgaaaccatgtttgcacccgagtttgggccagtgaaccctttt
aaaagccagcagatggctgcccccaggaacatgttatctggctatgcagaaccggctcac
gtcaatgacttcatgtttgaacagcaaaggaggaccttctccacatatggttatgcttta
gatccctctgttgacacacatcaagcgtcttctaatacctacatcggtgcagtggacgag
gctgagaaaaataaagggctgactgtgtttgagacgggtcataagaagtcagagaagagg
aagaagctcaaaggcggagatgctggagaaatagacaacttccttggaccatgggcgaaa
tatgtagatgagaaagacgtggctaaaccctcagaggacgagcagaaagagctggatgag
atcacggccaagaggcagaagaagggacggaatgaggaagatgctccagcagatgagaag
accatcctccatgttaaagacatgtatgattaccagggcaggtcatacctccatgtcccc
caggatgtgggcatcaacctgcgttctgcagacgctccggacaagtgttacctgcccaag
aaacagattcatgtctggtctggacacaccaagggtgtcagtgctatccgtctctttccc
aactctggtcatctgctgctttcctgctccatggactgtaaaatcaagttgtgggaagtg
tacggtgagaggcggtgcattcggacgtttattggtcacagtaaagcagtgcgagacatt
tgctttaacaacaccgggacccagttcctcagcgctgcatacgaccgctaccttaaatta
tgggacagcgagacaggccagtgtatctcccgcttcaccaacaggaaggtgccgtactgc
gtcaagttcaatccagacgaagacaaacagaacctttttgtggccggcatgtcagataag
aagattgtgcagtgggacatcaggacaggagaggtggttcaggagtacgatcgccacctg
ggtgccgtcaacaccatcaccttcgttgacgagaatcgtcgatttgtcagcacgtcagac
gacaagagtcttcgagtttgggagtgggacatccccgtggacttcaaatacatcgcagag
cccagtatgcactccatgccggctgtgactctctctcccaatggtaaatggctagcatgc
cagtccatggacaaccagattctgatctttggagcccaaaaccgtttcagactaaacaaa
aagaaagtcttcaagggccacatggtggctggctacgcctgccaagtggacttctcccca
gacatgagctacgtggtatcaggagatgcggacgggaagctgaacatttgggattggaag
accaccaaactctaccacaggatcaaggctcatgacaaagtgtgcatcagcgccctgtgg
catccacacgaaacctccaaggtcatcacctgtggctgggacggacagatcaaactctgg
gactag
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integrated database retrieval system
