Amphiprion ocellaris (clown anemonefish): 111585440
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Entry
111585440 CDS
T06018
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03013
Nucleocytoplasmic transport
aoce03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111585440 (upf2)
03015 mRNA surveillance pathway
111585440 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoce03019
]
111585440 (upf2)
Messenger RNA biogenesis [BR:
aoce03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111585440 (upf2)
mRNA cycle factors
P-body specific factors
111585440 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
111585440
NCBI-ProteinID:
XP_023150700
Ensembl:
ENSAOCG00000016766
LinkDB
All DBs
Position
21:complement(26187952..26224009)
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AA seq
1314 aa
AA seq
DB search
MIIFLVRHPSRNLLDGVLQRFTRKPTLTADVCFATVSSMPAERKRSVNMDEKDVFAFSNK
EKEKDREAERRPASARDKAKDEAKMSGKKDGGKEEKRKRLEEEKKKKEEKERRKKEEEKQ
KAEEEQKKKEEEEKRQQEEQERKVQEEEAKRQREEEAALLKEKEEGHQLHQEAWERHQCR
KELRSKNQNAHEGRPEEAFFSRLDSSLKKNTAFVKKLRTLTEQQRDSLSNDFASLNLSKY
IGEAVSSVVEAKLKISDVGCAVHLCSLFHQRYTEFAPLLLQAWKKHFEARKEDKAPNVSK
LRTDLRFIAELTIVGLFTDKEGLSLIYEQLKNIIGTDRETHTHVSVVISFCKHCGDDIAG
LVPRKVKLAAEKFGLGFPPSEIITTEKQQPFQNLLREYFTSLTKHLKKDHRELQNIERQN
RRILHSKGELSEDRHKQYEEFATSYQKLLANTQSLADLLDENMPELPQDKTVQEEHGPGI
DIFTPGKPGEYDLEGGIWEDEDARNFYENLVDLKAFVPAILFKDNEKSGQGKDKDDAKDG
REAKDSASTTEELELELEALDIADEPLELEGGDEVENEELAKKLLDEQEQEDEEASTGSH
LKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKSNRRKLVRALFTVPRQRLDLLPFYS
RLVATLHPCMSDVAEDLCSMLKGDFRFHIRKKDQINIETKNKTVRFIGELAKFKMFSKTD
TLHCLKMLLSDFTHHHIEMVCTLLETCGRFLFRSPDSHLRTSVLLEQMMRKKQAQHLDAR
YVTMVENAYYYCNPPPMEKTVKKKRPPLQEYIRKLLYKDLSKVTTEKVLRQMRKLPWQDP
EVKSYLICCMVNIWNVKYNSIHCVANLLAGLVAYQEDVGIHVVDGVLEDIRLGMEVNQPK
FNQRRISSAKFLGELYNYRMVESAVIFRTLFSFISFGVNQDGSPSPLDPPEHLFRIRMVC
TLLDTCGQYFDRGSSKRKLDCFLIYFQRYIWWKKSLDVWTKDHPFPIDIDYMISDTLELL
RPKMRLSCSLDEATKHVTDLEREVLVKLGLAMEKDGRSSAMSEGEVLDEEDDDDDEEGGA
ETEEQSGNESEMNEQEEDEGSENEEEEREEEDEENTDYLTDSNKENETDEENNEVTIRGG
GLKHVACAEDEDFIQALDKMMLENLQQRSGEAVKVHQLDVAIPLQLKSQLKKGGSGQTCI
GDGESDISDTMQFVMLTRKGNKQQYKILNVPLSSHLAANHFNQQQAEQEERMRMKKLTLD
INERQEQEDYQEMMQSLAQRPAPANTNRERRPRYQHPKGAPNADLIFKTGGRRR
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atgattatatttttagtcaggcatccttcgcggaacctactagacggggtcctgcagcgg
ttcacacggaaaccaacgctaacggccgatgtttgttttgctacagttagcagtatgcct
gctgaacgcaagcgctcagtaaacatggatgaaaaagacgtcttcgccttcagcaacaaa
gaaaaagagaaggaccgagaggctgagagacgaccagcgtcggctcgagacaaagcaaaa
gacgaggccaagatgagcggcaagaaagacggcggcaaggaggagaagaggaagcggctc
gaggaggaaaagaagaagaaggaggagaaggagcggaggaagaaagaggaggagaaacag
aaggcggaggaggagcagaagaagaaggaggaggaggagaagaggcagcaggaggagcaa
gagaggaaggttcaggaggaggaggccaaaagacaacgagaggaggaggcagctctcctc
aaggagaaggaggagggtcatcagctgcaccaggaggcctgggagcgccaccagtgcagg
aaggagctccgcagtaagaaccagaacgcccacgagggtcgacctgaggaggccttcttc
agccgcctggactccagccttaaaaagaacaccgccttcgtcaagaagctgcgaacgctg
accgagcagcaacgagactcgctgtccaacgatttcgcctcgctcaacctcagcaaatac
atcggagaggccgtgagctccgtggtggaagccaagctgaagatctccgacgtgggctgc
gccgtccacctgtgctcgctcttccaccagcgctacaccgagttcgctccgctgctgctg
caggcctggaagaagcactttgaggcccggaaggaggacaaggcgcccaacgtgagcaag
ctgagaacggaccttcgcttcatcgccgagctcaccatcgtcggcctcttcacagacaaa
gaaggcctctcgctcatctacgagcagctgaagaacatcattggcaccgaccgcgagacc
cacacccacgtatccgtggtgatcagcttctgcaaacactgtggagatgacatcgccggc
ctggtgccccgaaaggtgaaactggcggctgagaagttcggcctcggcttccctccgagt
gaaataatcaccaccgagaagcagcagcccttccagaacctcctgagggagtatttcaca
tccctcaccaaacacctgaagaaggaccacagggagctgcagaacatcgagagacagaac
aggcgaatcctacattccaaaggggagctgagcgaggaccgacacaagcagtacgaagag
tttgccacctcgtaccagaaactgctcgccaatactcagtcgctggctgacctgctggac
gagaacatgccggagctgcctcaggataagactgtacaggaggaacacggtcccggcatc
gacatcttcacccccggtaaacccggagagtacgacctggagggaggaatctgggaggac
gaagacgctcgcaacttctacgagaacctggtggacctgaaggccttcgtcccggccatc
ctcttcaaggacaacgagaagagcggccagggcaaggacaaggacgacgccaaagacggc
agagaggcgaaggactcggctagcaccactgaggaactggagctggaactggaagctctg
gacatcgcagacgaacctctggaactggagggaggagacgaggtggaaaatgaagaactg
gctaaaaaactgctggacgaacaagaacaagaagacgaggaggccagcactggttcacac
ctgaagctgatcgtagacgccttcatccagcagcttcccaactgtgtcaacagagacctc
atagacaaggccgccatggacttctgcatgaacatgaacaccaaatctaacaggaggaaa
ctggtcagagctctgttcaccgtcccgagacagaggttggatcttctgcctttctactcc
cgtctggtggcgactcttcatccctgcatgtctgacgtcgctgaggatctctgctccatg
ctgaagggagacttcaggtttcatattcggaagaaggaccagatcaacatcgagacgaaa
aacaaaacggtcagattcatcggggagctggccaagttcaagatgttctccaagactgac
acgctgcactgtctgaagatgctgctgtctgacttcacccaccaccacatcgagatggtg
tgtacgctgctggaaacctgcggccgcttcctgttcagatcccccgactctcacctgaga
accagcgtcctgctggaacaaatgatgcgtaaaaagcaggcccaacatctggacgcgcgc
tacgtgacgatggtggagaacgcctactactactgcaaccctccacccatggagaagacg
gtgaagaagaagaggcctccgctgcaggaatacatccgtaagctgctctacaaagacctg
tccaaggtcaccacggagaaggtgctccggcagatgaggaagctgccgtggcaggacccc
gaggtgaagagctacctgatctgctgcatggtcaacatctggaacgtcaagtacaacagc
atccactgcgtggccaacctgctggccggcctggtggcctaccaggaggacgtgggcatc
cacgtggtggacggagtgctggaggacatccggctgggcatggaggtcaaccagcccaag
ttcaaccagcgtcgcatcagcagcgccaagttcctgggagaactctacaactaccgcatg
gtggagtcggccgtcatcttccgcaccctgttctccttcatctccttcggggtgaaccag
gacggcagccccagtcctctggaccctccagaacacctgttccggatccggatggtctgc
acgctgctggacacctgcggtcagtacttcgaccgaggatccagcaagaggaagctggac
tgtttcctcatctacttccagcggtacatctggtggaagaagagcctggacgtgtggacc
aaagaccacccgttccccatcgacatcgactacatgatcagcgacactctggagctgctg
aggccgaagatgaggctgagctgctcgctggacgaagccaccaaacacgtgaccgacctg
gagagggaggtcctcgtcaagctaggtctggccatggagaaggacggccgctccagcgcc
atgagcgaaggcgaggtgctggacgaggaagacgacgacgacgatgaagagggaggcgcc
gagaccgaggagcagtcaggcaacgagagcgaaatgaacgaacaggaagaggatgaagga
tcagagaacgaggaagaggagcgggaggaagaggacgaagaaaacaccgactatctgacc
gactccaataaagaaaatgaaaccgacgaggagaacaatgaggtaacaatccgaggcggt
ggattaaaacacgtcgcctgcgctgaagacgaggactttattcaggctctggataagatg
atgctggagaacctgcagcagcgtagcggcgaggcggtgaaggtccaccagctggacgtg
gcgattcctctgcagctgaagagccagctgaagaaaggcggatccggacagacctgcatc
ggggacggagagtcggacatctcagacaccatgcagttcgtcatgttgacccgcaaaggc
aacaagcagcagtataagatcctgaacgttccgctgtcgtcccacctggcggcaaatcac
ttcaaccagcaacaggccgagcaggaggaacgaatgaggatgaagaaactgactctggac
atcaatgagaggcaggaacaggaggactaccaggagatgatgcagtctctggctcagcgt
ccggctccggccaacaccaaccgggagcgccggcctcgataccagcatccgaaaggagct
cccaacgccgacctcatcttcaagaccggaggaaggagacgctga
DBGET
integrated database retrieval system
