Amphiprion ocellaris (clown anemonefish): 111588250
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Entry
111588250 CDS
T06018
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like isoform X1
KO
K07466
replication factor A1
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03030
DNA replication
aoce03420
Nucleotide excision repair
aoce03430
Mismatch repair
aoce03440
Homologous recombination
aoce03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
111588250
03420 Nucleotide excision repair
111588250
03430 Mismatch repair
111588250
03440 Homologous recombination
111588250
03460 Fanconi anemia pathway
111588250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
aoce03000
]
111588250
03032 DNA replication proteins [BR:
aoce03032
]
111588250
03400 DNA repair and recombination proteins [BR:
aoce03400
]
111588250
Transcription factors [BR:
aoce03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
111588250
DNA replication proteins [BR:
aoce03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
111588250
DNA repair and recombination proteins [BR:
aoce03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
111588250
MMR (mismatch excision repair)
111588250
DSBR (double strand breaks repair)
HR (homologous recombination)
111588250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Extensin_1
UTP20_C
IBR
CATSPERD-E_C
Motif
Other DBs
NCBI-GeneID:
111588250
NCBI-ProteinID:
XP_023154281
Ensembl:
ENSAOCG00000009003
LinkDB
All DBs
Position
14:complement(10028224..10074084)
Genome browser
AA seq
649 aa
AA seq
DB search
MSVTLTQGAVEALFKGVQVNNPVLQLLSIRQISTTSGPPRFRLLMSDGQHSLSSLLLATQ
LNYLTEQNLLVPNCVCLLKKTIINTLADGRHVVIVMDLEILQSAEETGGKIGNPTLYSAD
GKNSSPKKVSSSTSVSASPPSAAVPGTSYSSSNTAFSASGGRGRGFTGKAPMNASPMNAS
PMKTSPMKTSPMKASPMKASPMKTSPLKATSTSPGSTAKAMPIANLNPYQSKWTIRARVT
NKSNIRTWSNSRGEGKLFSFEIVDESGEIKITAFNNEVDKFFSLVEQGKVYYISKATLKV
ANKQYTTLKHEYEMTLHANSSIIPCDDSQGVPTLNCDFVPIAELENRDKDAIIDLIGVCK
SAEDVSRITTKSSREVSKRALSLIDTTGKVVTVTLWGEEAEKFDSSGQPVVAIKGARLSD
FGGRSLSALFSSTVMVNPDIPEAFRLRAWYDQEGYAFDSQSLTETRSSVSGSRMNWKMLS
DVKSESMGHGEKADYFSCIATVVYIRKENCLYQACPSADCNKKVIDQQNGLYRCEKCNRD
FPNFKYRLLLSANLADFGDNQWVTCFQETAEVLLGHSAETLGQLRDTDEDALDEVFQKAT
FRTHIFKNRAKLETYNDESRVKVTVLEVLPVNHREYSRRLLSNIHKLAS
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtaacactcacacagggggcggttgaagccctgttcaaaggtgtacaggtgaac
aaccctgtgctgcagctgctgagcatccgtcagatcagtacaacctcaggcccacccagg
ttccggcttctgatgagtgatggtcagcactctttgtcatccttgcttctggccacacag
ttgaactatctgacagagcagaacctcctggtaccaaactgtgtgtgtttgctgaagaag
accatcatcaacacattggcagatggaagacatgtggtgattgtgatggacttggagata
ttacagtcggctgaggaaactggaggaaagattggaaatcccactctatatagcgcagat
ggtaagaattcatctccaaagaaggtgtcttcaagtacatctgtttcagcttcccctcca
tctgcagcagtacctggaacctcctatagcagcagcaacacagccttttctgcttcggga
ggtcgaggaagaggatttactggaaaagcacccatgaacgcttcgcccatgaacgcttcg
cccatgaagacttcgcccatgaagacttcgcccatgaaagcttcacccatgaaagcttca
ccaatgaaaacttcaccattgaaagccaccagcacttctccaggttcgacagcaaaagca
atgcccattgctaacctcaacccttaccaaagcaagtggactatcagagccagagtcacc
aacaagtccaacatccgcacgtggagtaactctagaggagagggcaagctcttctccttt
gagatagtggatgaaagtggagaaatcaagatcactgccttcaacaacgaagtggacaag
tttttctctctagtggagcaaggcaaggtgtactacatctccaaggcgacacttaaggtg
gctaacaaacagtacacgacgctgaagcacgagtacgagatgaccctccacgctaattca
tccattataccatgtgatgacagtcagggtgtccccacactcaactgtgactttgtgccc
atcgcggagctggaaaacagagacaaagatgctatcattgatttgattggagtgtgtaag
agtgcagaggatgtatcccgtatcaccactaagtccagcagagaagtctccaagagggcc
ctcagcctaatagacacaaccggcaaagtggtgacagtcacactgtggggagaggaggcg
gaaaagtttgacagctctgggcagcctgtggttgccatcaaaggagctcgcttgtctgat
tttgggggcagatctctctctgctttgttcagctcaacagtcatggtcaacccagacata
ccagaggcctttagactgagggcgtggtatgaccaggaaggctatgcattcgacagccaa
tcactgacagagacgaggtcatcagttagtggatcaaggatgaactggaaaatgctgagt
gatgttaagagtgaaagcatgggacacggagagaaggcagactatttcagctgcatagca
acagtggtgtacatacgtaaggagaattgtctgtaccaggcctgtccatctgcagactgc
aacaagaaagtcattgaccaacagaatggactgtaccgctgcgagaagtgtaaccgagac
ttccccaacttcaaatacagactcttactttctgccaacttagcagacttcggggataac
cagtgggtgacatgcttccaggagacggctgaggtcctgttgggccacagtgcagaaaca
ctgggacagcttagagacacagatgaagatgcattagatgaagtcttccagaaagccacc
ttcagaactcacatctttaaaaacagagccaagctggagacgtacaacgacgagagtcga
gtgaaggtaactgtgttggaagtcctaccagtcaaccacagggaatacagcaggaggttg
ctcagtaacatccacaaattggcgagctga
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