Amphiprion ocellaris (clown anemonefish): 111588341
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Entry
111588341 CDS
T06018
Name
(RefSeq) embryonic polyadenylate-binding protein-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03015
mRNA surveillance pathway
aoce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111588341
09123 Folding, sorting and degradation
03018 RNA degradation
111588341
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoce03019
]
111588341
03041 Spliceosome [BR:
aoce03041
]
111588341
Messenger RNA biogenesis [BR:
aoce03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
111588341
mRNA cycle factors
Stress granule specific factors
111588341
Spliceosome [BR:
aoce03041
]
Complex C
Other components
Complex C specific factors
111588341
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RBD_DEAH11
RRM_3
RBD_RDR6
Motif
Other DBs
NCBI-GeneID:
111588341
NCBI-ProteinID:
XP_023154461
Ensembl:
ENSAOCG00000006167
LinkDB
All DBs
Position
8:complement(26393100..26408156)
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AA seq
654 aa
AA seq
DB search
MNSSGPTYPLASLYVGDLHPDVTEAMLYQKFSPAGPIISIRVCRDIITRRSLGYAYINFQ
QPADAECALDTMNYDLIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFS
TFGNILSCKVVSDEKGSKGYGFVHFETQEAANRAIETMNGMLLNDKKVEVTDKWLKPGIV
NSEAMVLGETCQGQPSFVGHFKSRKEREMESGSKASKFTNVYIKNFGEDCTDETLKDMFS
AFGRTLSVRVMKDEKGRSRGFGFVNYGNHEEAQKAVDEMNGKEIDGKILYVGRAQKRQER
QDELKRKFDQIKQDRNQRYQGVNLYVKNLDDTIDNETLRKEFAPYGTITSAKVMTDGTQS
KGFGFVCFSSAEEATKAVTEMNGRIVASKPLYVALAQRREERKAILTNKYLQRLATMRSM
PGTIIDSFHQSAYYITVPQPPARSFYNHSAVSNFRSAPRWTGQPPRPQGPYSPQFSGGSV
VRRGSASITTVRQASTQAPRVVTSTQKTNNIGTQTVGGRTDMPAEYRSSQYKYYSAVRNP
QQVVPVPPPMTRLQVGPAPVMEPPAHVQGPEPLTASLLAAAPLRDQKQLLGERLYPMIHA
LHPNLAGKITGMLLEIDNSELLHMLESPESLNSKVDEAIAVLQAHQAKQCSTKK
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcagtggaccgacctatcctctggcttctttgtatgtcggggacctgcaccct
gatgttacagaagccatgctttatcagaagttttctcctgctggacccattatttcaatc
cgtgtgtgccgtgacatcatcacccgcagatctctgggatacgcctacataaacttccag
caaccagctgatgcggagtgcgccctagatacgatgaactatgacctcatcaaaggtcgg
ccaattcgaataatgtggtctcagcgtgacccaggactcaggaaatctggtgtgggtaac
atctttatcaagaacatggatgagtccattgacaacaaggcgctttatgataccttctca
acctttggcaatattttgtcttgcaaggttgttagtgatgagaaaggatccaaaggctac
ggctttgttcactttgagactcaggaggctgcaaaccgggccattgaaaccatgaatggg
atgctgcttaatgataagaaagttgaagtgacagataaatggttgaaacctggcattgtc
aactcagaggccatggttctgggggaaacatgtcagggccagcctagttttgttggccac
ttcaagtcacgcaaggagagagagatggagtctggctccaaagcttccaagttcaccaac
gtctacatcaaaaactttggtgaagactgcactgatgagacactcaaggacatgttttca
gcatttgggaggacgctgagtgtgcgcgtgatgaaggatgagaagggtcgttctcgagga
ttcggctttgtaaactatggcaaccatgaagaagctcagaaggcagtcgatgaaatgaac
ggaaaggagatcgatgggaaaatcctctatgtagggcgagctcagaagcgtcaggagcgt
caggatgagctgaagcgcaagtttgaccagatcaagcaggaccgcaaccagcgctaccag
ggtgtgaacctgtatgtgaagaacttagacgacaccatagataatgagacactccggaag
gagtttgccccttacggcaccatcaccagtgccaaggtgatgacagatggcacccaaagc
aaaggctttggcttcgtctgcttctcttctgccgaagaagcaacaaaagcagtaactgaa
atgaacgggagaattgtagcaagcaagccgctgtatgtggctttggctcagcggagagag
gagcgcaaagcaattcttactaacaagtacctgcagaggcttgctacgatgagatctatg
cccggtaccattatcgactcattccatcagtctgcatactacatcactgtcccgcagcct
cccgctcgctccttctacaaccacagcgctgtcagcaactttagatctgcccctcgctgg
acaggacaaccaccgagaccacaaggcccttactcaccccagttttcaggtggttctgtt
gtacgacgtggatcggcctccatcactacagtcagacaggcttccactcaggctccacgt
gttgtaacctccacacaaaagacaaacaacataggcactcagactgtaggagggcgaact
gacatgcctgctgagtacaggagcagccagtacaagtattactctgcagtgaggaaccct
cagcaggttgttcctgtacccccacccatgacaagactacaggttggtcctgcgcctgtc
atggagccaccagcgcatgttcaaggaccagagccgctcactgcctcattgctggctgca
gctccactcagggatcagaaacagcttcttggggagcgtttgtacccaatgattcatgcc
ctccacccaaacctggctggaaaaatcactggcatgctgctggagatcgacaactccgag
ctgctgcacatgctggagtcgcccgagtccctgaactcaaaggtggatgaggcaatcgct
gtcctacaagctcaccaggcgaagcagtgttctactaagaagtga
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