Amphiprion ocellaris (clown anemonefish): 111589025
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Entry
111589025 CDS
T06018
Symbol
pdzrn3b
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B isoform X2
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
aoce04121
]
111589025 (pdzrn3b)
Enzymes [BR:
aoce01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
111589025 (pdzrn3b)
Ubiquitin system [BR:
aoce04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
111589025 (pdzrn3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
Sina_ZnF
zf-TRAF
Prok-RING_4
PDZ_Tricorn
zf-rbx1
U-box
TRAF3_RING
zf-RING_6
RING_XB3-XBAT31
TRAF2_zf
IBR_1
Motif
Other DBs
NCBI-GeneID:
111589025
NCBI-ProteinID:
XP_023155480
Ensembl:
ENSAOCG00000023264
LinkDB
All DBs
Position
5:15651152..15749904
Genome browser
AA seq
1048 aa
AA seq
DB search
MGFELDRFKGTVDPDFKCNLCNKVLEDPLTTPCGHVFCSGCVLPWVVQQSSCPVKCQRIS
TKELNHVLPLKNLILKLEIKCDNHARGCDAVVKLQHLAEHAEMCDYSPAKCRNKGCSEEL
NLRDVDAHMRETCDYRPVGICESGCGLMLTQREQRLNSHCCLRALKAHNSALHCKIIILD
REFKKQTIKANKREKSLLAQLSAVHSELQMTALKYQKKFTEYSERIDSLTKTVAFSCKEG
ETKSVTVVLLREGGSLGFNIIGGRPCADDNDSTSNEGIFVSKIVEKGPADKEEGLQIHDR
IIEVNGKDLSKATHDQAVEAFRTAKEPIMVQVLRRAPYPKLVGPTADAQVSDISTQTDIT
LQHIMALTKLPPSSPPMTELEEYLLPEEHAPGHAYFDPNDFLEGIQQDIEREELEYEEVD
LYRANIQDKLGLTICYRTDDEDEAGIYISEIDPNSIAAKDGRIREGDKIIQINGVEIQNR
EDAVALLTSESNQNISLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEQQHHQAMQFTAS
MLQQKKHEEDGGTTDTATLLSNHHEKDSGVGRTDESTRNDESSEQENLCDDQTTASNTLG
SCRKLTYSQDTLGSTDLPFSSESFMSTDYADTDFLGIPADECERFRELLELKCQMRSSGA
QGLCCQVGGAGGQDQEGVDKELELLNEELRTIELECLNIVRAHKMQQLREQCRESWMLHN
SGFRNYNTSIDARRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLELSPDNSLRRGA
ENQGPAGTSGSTSSNGRMLKPLLSPVQEAGGPSRGRGSSKDPDGALQAESKDRKLGESSK
NGRSFPHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSMCRDPISPSDLEPK
MEWKVKIRSDGTRYITKRPVRDKLLRERALRIHEERSGMTTDDDAISELKMGRYWSKEER
KQHAVRAKEQRQRREFMKQSRADCLKDLSGAEDKKEPNIIELSHKKMMKKRNKKIFDNWM
TIQELLTHGTKSPDGTRVYNSLLSVTTV
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atgggattcgagctggaccgcttcaaggggaccgtggacccggatttcaagtgcaacttg
tgcaataaagtcctggaggacccgctgacgactccgtgcggtcacgtcttctgctcgggc
tgcgtgctgccctgggtcgtccagcagagcagctgccccgtcaaatgccagcggatctcc
accaaggagctgaaccacgtcctgcctctgaaaaacctcatcctgaagctggagatcaaa
tgtgacaaccacgcgaggggctgcgatgcggtggtgaagctgcagcatctggccgagcac
gccgagatgtgcgactactccccggccaagtgcaggaataaaggatgcagcgaggagctc
aacctgcgggacgtggatgctcacatgcgggagacgtgcgactacagaccggtggggatt
tgcgagagcggctgcgggctgatgctcacccagagagagcagagactgaacagccactgc
tgcctgagagccctgaaggcgcacaacagcgcgctgcactgcaagatcatcatcctggat
agagagttcaagaagcagactattaaagccaacaagagggagaagtcactcctggcgcaa
ctttccgccgtgcacagcgagctgcagatgacagcgctgaaatatcagaagaaattcacc
gagtacagcgagaggatcgactccctcaccaagactgtggctttctcgtgcaaggaaggc
gagactaaaagcgtgacggttgtccttcttcgtgagggtggatctctgggttttaacatc
ataggaggaaggccatgcgcggatgacaatgacagcacttcaaatgaagggatctttgtg
tctaagatcgtcgagaaaggtccagcagacaaggaggaaggccttcaaatccacgacaga
ataatagaggtcaatggcaaggacctctccaaggccacccacgaccaggcggtggaggca
ttccgcactgccaaggagcccatcatggtccaggttctgcgccgggccccttaccccaaa
ctggtcggccctaccgctgacgcccaggtctcagacatcagcacccagactgacatcacc
ctccagcacatcatggcccttaccaagctgcctccctcctcgccccccatgacggagctg
gaggagtatctgcttccagaggagcacgctcctgggcatgcgtacttcgaccccaatgat
ttcctggagggcatacaacaggacattgagcgtgaggagctggaatatgaggaggtggat
ttgtaccgagccaacatccaagacaagctgggcctgacgatctgttacaggacagatgat
gaggatgaggctgggatctacattagtgagattgatccaaacagcattgctgcaaaggat
ggcagaattagagaaggtgacaaaatcatacagatcaatggggttgagatccaaaatcga
gaggacgccgtagcactgctgaccagcgagagcaaccagaatatctctctgttggtggcc
agaccagagatccagctggacgagggctggatggatgatgacaggaacgacttcctggat
gacctccacatggatatgctggagcagcagcaccatcaggccatgcagttcactgccagc
atgctgcagcagaagaagcatgaggaggatggaggcaccacagacacagccacgctgctc
tccaaccaccatgagaaggacagcggtgtcggacgaacagatgagagcacacgaaacgac
gagagctcggagcaggagaacctctgtgacgaccagaccacggcctccaacacgctgggc
agctgcagaaagctgacgtacagtcaggacaccctcggcagcaccgacctgcccttcagc
agcgagtcgttcatgtccacagactacgccgacaccgacttcctgggcatcccggccgac
gagtgcgagcgcttcagagaactgctggagctgaagtgtcagatgaggagcagtggagct
cagggcctgtgctgccaggtcggtggggcaggaggtcaggaccaggagggtgtggacaag
gagctggaactgcttaacgaggagttgcgcactattgagctggagtgcctgaatatcgtc
cgtgctcacaagatgcagcagctgagggagcagtgccgtgagtcctggatgctccacaac
agtggattccgcaactacaacactagcatagatgctcgccgccatgagctgtcagacatc
acagagctgcctgagaaatctgacaaggacagctccagtgcgtacaacactggagagagc
tgccgcagcacccctctcactctggaactgtctccagataactcactccgccgaggcgca
gagaaccagggtccagctggaacatctggttccaccagctccaacggccggatgctgaag
cctcttctgtcccctgtccaggaggctggtggccccagccggggcagaggctcctccaag
gacccagatggagcactacaggcagagagcaaggacaggaagctgggagagtccagtaag
aatgggcgtagctttccccattcaccttacaagcatgctcacatccctgcccacgcccag
cactaccagagctacatgcagctgatccagcagaagtcagctgttgagtacgcccagagt
cagatgagtttggtcagcatgtgccgggaccccattagccccagtgacctggagcccaag
atggagtggaaggtgaagatccgcagcgacggcacacgttacatcacaaagcggcctgtc
cgggacaagctgctgagagaacgtgcccttcgaatccacgaggagcgcagcggcatgacc
acagacgacgacgccataagtgagctgaagatgggccgctattggagcaaggaagagagg
aagcagcatgcagttcgcgccaaggagcagaggcagcgccgtgagttcatgaaacagagc
cgagccgattgtctgaaagatctctccggcgcggaggacaaaaaggagcccaacatcatc
gaactcagccacaaaaagatgatgaaaaagaggaataagaaaatatttgacaactggatg
accatccaggaactgctgacccacggtaccaagtcaccagatggcacaagagtttacaac
tcactcctgtctgtgaccacagtttaa
DBGET
integrated database retrieval system
