KEGG   Arthrobacter oryzae: Q8Z05_02130
Entry
Q8Z05_02130       CDS       T09304                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
aod  Arthrobacter oryzae
Pathway
aod03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aod00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Q8Z05_02130
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aod03019]
    Q8Z05_02130
   03009 Ribosome biogenesis [BR:aod03009]
    Q8Z05_02130
Enzymes [BR:aod01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Q8Z05_02130
Messenger RNA biogenesis [BR:aod03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Q8Z05_02130
Ribosome biogenesis [BR:aod03009]
 Prokaryotic type
  rRNA helicases
   Q8Z05_02130
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 UvrA_inter HEM4 Ribosomal_L12_N Cas3-like_C_2
Other DBs
NCBI-ProteinID: WLQ06976
LinkDB
Position
complement(452848..455031)
AA seq 727 aa
MPENHNDATTDAATAETAVETPETAAPEAGSAPLFTEAPAPVEAPAAEAPAAEAPKTEAP
KAEAPKAEDEEEGIRFADLGIDGRVLAALQDVGYEKPSPIQAATIPLLLEGRDVVGLAQT
GTGKTAAFAVPALSRLAELHDLNGPSRKTQALVLAPTRELALQVAEAFTSYAKHIDDFTV
LPVYGGSAYGPQLAGLRRGAQVVVGTPGRVIDHISKGSLDLSELQYLVLDEADEMLRMGF
AEDVEQIFQQTPSDRQVALFSATMPSQIRRMSKQYLNNPAEISVKSKTTTGANTRQRYLQ
VMGPHKLDALTRILEVEEFDGVIAFVRTKMATEDLADKLKARGFQAAAINGDIPQQQRER
TVDALKEGRIDILVATDVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRSGDAI
LFMTPREKYLLRSIEKATRQPVEQMHLPTAETVNTLRLGKFAERITETLESEDVAAFRDL
ISSYEEEHNVPASEIAAALAVMAQGGQPLLVKELPAAPEFQKRERSKDGFGSRGPTRTLT
EGNATYRIAVGRRQRVMPGSIVGAIANEGGISSAQIGGIDIRSDHSLVELPADLSPEQLR
ALSRTRIGGELIHLELDNGRKPSGGGERGSYQGNRGGDRGGYSGGGDRGGNFKGSGGFKK
DFRKNDGERSSADRGGRSYSERSVGADSGATRGQASDSRFGGHGDGSRKPRHGNEGGQRD
FNRKGKW
NT seq 2184 nt   +upstreamnt  +downstreamnt
atgcccgaaaatcacaacgacgccaccaccgacgcagcaactgccgaaaccgccgtcgaa
acccccgagaccgctgctcccgaagccggctccgcccccctcttcaccgaagcgcccgca
cccgtcgaagcgcctgccgccgaagcgcctgccgctgaagcccccaagaccgaggctccc
aaggctgaggcccccaaggccgaggacgaagaagagggcatccgcttcgccgacctcggc
atcgacggccgcgtcctcgccgcgctgcaggatgtcgggtacgagaagccgtccccgatc
caggcagcaaccatcccgctgctgctcgaaggccgcgatgtcgtcggcctggcccagacc
ggcaccggtaagactgcagcattcgcagtaccggcgctgtcccgcctggccgagctccac
gacctcaacggcccgtcccgcaagacgcaggccctggtccttgccccgacccgtgagctg
gcgctccaggttgccgaggccttcacctcctacgccaagcacatcgacgacttcaccgtt
ctcccggtgtacggcggctccgcctacggcccccagctcgccggcctgcgccgcggcgcc
caggttgtcgtcggtacccccggccgtgtcatcgaccacatctccaagggttccctggat
ctgtccgaactccagtacctggtgctggacgaggccgacgaaatgctccgcatgggcttc
gccgaagacgtggagcagatcttccagcagacgccttcagaccgccaggtcgccctgttc
tcggccaccatgccgagccagatccgccggatgtccaagcagtacctgaacaacccggcc
gagatctcggtaaagtccaagaccaccaccggcgccaacacccgccagcggtacctgcag
gtcatgggcccgcacaagctcgacgccctgacccgcatcctcgaggttgaagagttcgac
ggcgtcatcgccttcgtgcgcaccaagatggctaccgaggacctggccgacaagctgaag
gcgcggggcttccaggctgccgccatcaacggcgacatcccccagcagcagcgcgaacgc
actgtcgacgccctcaaggaaggccgcatcgacatcctggtggccaccgacgtcgcggcc
cgcggccttgacgttgagcgcatcagccacgtggtcaactacgacatcccgcacgacacc
gagtcgtacgtccaccgcatcggccgcaccggccgtgcaggccgttccggcgacgccatc
ctgttcatgacgccgcgggagaagtacctgctgcgttccatcgagaaggccacccgccag
ccggtggagcagatgcacctgcccacggccgagaccgtcaacacgctgcgcctgggcaag
ttcgccgagcgcatcacggagaccctcgagtccgaggacgttgccgcgttccgcgacctc
atctcctcctacgaggaagagcacaatgtgcccgcctcggagatcgctgctgcactggcc
gtcatggcgcagggcggacagccgctgctggtcaaggaactgccggcagctcccgagttc
cagaagcgtgagcgctccaaggacggcttcggctcccgtggaccgacccgcacgctgacc
gaaggcaacgccacctaccggatcgccgtcggacgccgccagcgcgtcatgccgggctcc
atcgtgggcgccattgccaacgagggcggcatttcctcggcccagatcggcgggatcgac
atccgctcggaccactccctcgtggagctcccggcggacctgagccccgagcagctgcgc
gccctgtcccgcacccggatcggcggcgagctgatccacctcgagctggacaacggccgc
aagccgtccggcggaggcgagcgtggcagctaccagggcaaccgtggcggcgaccgcggc
ggatactccggcggcggcgaccgtggcggcaacttcaagggcagtggcgggttcaagaag
gacttccgcaagaacgacggcgagcgttcctccgctgaccgcggcggccgctcgtacagc
gagcgttccgttggtgccgacagcggcgccacccgcggccaggccagcgactcccgcttc
ggcggccacggtgacggctcacgcaagccccgccacggcaacgagggcggacagcgtgac
ttcaaccgcaagggcaagtggtaa

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