Alkaliphilus oremlandii: Clos_0967
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Entry
Clos_0967 CDS
T00607
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
aoe
Alkaliphilus oremlandii
Pathway
aoe02020
Two-component system
aoe02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
aoe00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Clos_0967
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Clos_0967
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aoe03021
]
Clos_0967
Transcription machinery [BR:
aoe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Clos_0967
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_21
HTH_3
Sigma70_r4
DUF3460
HTH_Crp_2
LacI
Arg_repressor
HTH_IclR
Rootletin
Motif
Other DBs
NCBI-ProteinID:
ABW18514
UniProt:
A8MFX6
LinkDB
All DBs
Position
1058681..1060066
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AA seq
461 aa
AA seq
DB search
MKMGFNLQLEQSQKLIMTPQLQQAIQILQFNSLELEEFIAEQLEKNPVLENDAEKEHNEL
WDSKIEDKIKEINWKEYIEDFNNYSYTKSNYQNEDNEFNYENIISNKSSLQEYLLFQYSL
TLLDRKYFEIGEYLINSIDDRGYLTVTIKDVTEHFNEEENIVESILQIIQSFDPPGVGAR
TIEECLLLQLRFLDVKDEKIYQLIKEYLPEIAANKYPLLAKKLGVTIEQLQGYCDFIKTL
EPKPGRMFESNLNRYITPDITVKKLDEEYILLTNDFDEPRLKIREDYRTMIISEDENSEV
AKFLNNQFNSAAWLIRSIEQRKQTIYKVAEVIVEKQKGFFEKGKKFLVPMTLKEVAEEIS
VHESTVSRATNGKYMETPHGTFELKFFFTGGVESDEGMGISSESIKSFIRDIIKVEDPKK
PLSDDKIVSELERKGISISRRTVAKYRDEMGILSSSKRKRY
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgggatttaatttgcagttagaacaatctcaaaaattaattatgactcctcaa
ttacaacaagcaatacaaattttgcagttcaactctttagagctggaggaatttattgct
gagcagttagaaaaaaatcctgtattggagaatgatgcagagaaggaacataatgaacta
tgggactcaaaaatagaagataaaataaaagagatcaactggaaggaatatatcgaagat
tttaacaactattcctatacaaaaagtaattatcagaatgaagacaatgagttcaattat
gaaaatatcatctccaataaatcatcgttacaagaatatttgttatttcagtatagcttg
accttactagatagaaaatactttgaaataggggaatatttaatcaatagtatcgatgat
agaggctatttaacagtgaccattaaggatgtaaccgaacattttaatgaagaagaaaat
attgtggaaagtattttacaaataattcaaagcttcgatcctccaggagtaggagcaaga
accatagaagagtgcctattattacaattgcgatttttagatgtgaaagatgagaaaatt
tatcaattaataaaagaatatttacctgaaattgctgccaataagtatcctcttttagcc
aagaaacttggtgtcaccattgaacagcttcaaggatattgcgattttatcaaaaccttg
gagccgaaacctggtcgaatgtttgaatcgaatttgaatcgatatattacaccagacatt
accgttaaaaagctggatgaagaatatattttattgaccaatgattttgacgagcctcgt
ttaaagatcagagaggattatagaacgatgatcatttctgaggatgaaaattcggaagtt
gctaaatttttaaataaccaattcaactctgctgcctggcttatacggagcattgaacaa
agaaagcaaacgatttacaaggtagcggaagttattgtagaaaagcaaaagggatttttt
gaaaaaggaaagaaattcttagtgccaatgaccttaaaagaggtggcagaagaaattagc
gttcatgaatccactgtcagtagagctacaaacggaaaatatatggaaacaccacacggt
acctttgaactaaagtttttcttcaccggaggcgttgaaagtgacgaaggaatgggaatt
tcttccgagagcatcaaaagctttatcagagatatcattaaagtggaggatccgaagaag
cccctcagtgacgataaaattgtgagtgaattagaaagaaaaggaatcagtatttctagg
agaaccgttgcaaaatatagagatgagatggggatattgtcctcttctaaaagaaaaaga
tattaa
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