Alkaliphilus oremlandii: Clos_0977
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Entry
Clos_0977 CDS
T00607
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
aoe
Alkaliphilus oremlandii
Pathway
aoe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aoe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Clos_0977
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoe03019
]
Clos_0977
03016 Transfer RNA biogenesis [BR:
aoe03016
]
Clos_0977
Enzymes [BR:
aoe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Clos_0977
Messenger RNA biogenesis [BR:
aoe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Clos_0977
Transfer RNA biogenesis [BR:
aoe03016
]
Prokaryotic type
tRNA degradation factors
Clos_0977
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
WHD_MCM
MLD
CTC1_2
Motif
Other DBs
NCBI-ProteinID:
ABW18524
UniProt:
A8MFY6
LinkDB
All DBs
Position
1070301..1072418
Genome browser
AA seq
705 aa
AA seq
DB search
MSVKEKLLEFMYETAYNPMLEEELMDVFDIERKQREDFSKLLEDMVKEGLIIKTRKKRFG
TPERMGLILGKLQGHHRGYGFVISDRPEVPDVFIPANFMNGAMNNDRVIARINTVNSETR
KSEGEVIRILSRANTEVVGVYEDSRNFGFVVPDDPRINADIFISKNETNGAKEGDKVVCE
ITKWPEARRNPEGRITEIIGHKNDVGTDILSVMKKYKLNPDFPEEVDMQVGNIADEVLEE
EKKHRVDLRSIQMVTIDGADAKDLDDAVSIEQLSNGNYKLGVHIADVTHYVREGTPLDKE
ALERGTSVYLVDRVIPMLPRKLSNGICSLNPKVDRLTLSVFMEIDHRGRVVNHEIVEGLI
NINERMVYEDVSDILEKDDEKLKEKYADFLEMFKNMEKLSLILRKHRENRGAIDFDFPEA
KVILDDKGKPIDVKKYERRIANRIIEEFMLVCNETVAEYFYWQNVPFVYRVHEDPSLEKL
EEFNKFIHNFGYHLKGLNTEIHPKSLQELLKKLEGTKEERLINTLMLRSLKKARYAGHNL
GHFGLAAQYYCHFTSPIRRYPDLEIHRIIKESLHGKLVGKRLEELNAKVPIIADQSSTRE
RVADEAERETVDLKKAEYMADKIGEEYEGIISGVTSFGMFVELDNTIEGLIRLSSLVDDY
YIYDSEHHLLLGERKKKIYRMGDTIKIKVSRVDIAQKEIDFVLAE
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
ttgtcagtaaaagaaaaattgttagaatttatgtatgaaacagcttataatccaatgcta
gaagaagaattgatggatgttttcgacatagaaagaaagcaaagagaggatttctctaaa
ttattggaggatatggttaaggaaggtctaattattaaaactcgaaaaaaacgctttgga
acaccggagcgaatgggattaattttagggaagctgcaaggacatcatagaggatatggt
ttcgtaatttccgatcgaccagaggttccagatgtttttatacctgccaactttatgaat
ggcgcaatgaataacgatcgagtcattgctagaatcaacacagtaaatagcgaaactcgc
aaatctgaaggagaggtcatccgaatactttctagggccaatacggaggtagtcggtgtg
tatgaagacagcagaaactttggattcgttgttcctgatgatcctagaatcaacgcagat
atttttatttctaagaatgagaccaatggagcaaaggaaggcgataaggttgtttgcgaa
attaccaagtggcctgaagctagaagaaatccagagggaagaattacggagatcattgga
cataaaaacgacgttggtacggacatcttatctgtcatgaaaaaatataagctgaaccca
gattttccagaagaagtcgatatgcaggttggtaacatcgccgacgaagttttagaagag
gaaaagaaacatagagtggatttgcgttccatccaaatggtcactatagatggtgccgat
gcaaaagacttggacgatgctgtatccatagagcagctatccaacggaaattataagttg
ggtgtgcatattgcagacgtcacccattatgtacgagaaggaacgcctttggataaagaa
gctttagagcgaggcaccagtgtgtacttagtagaccgggtaattcctatgctgcctcgt
aagctatccaatgggatctgtagtttgaatccaaaggtagatcggttgacattgtctgta
tttatggaaattgatcatagaggtagagttgtgaatcatgagattgtagaaggcttgatc
aacatcaatgaaagaatggtctatgaagatgtttctgatatattggaaaaagacgatgaa
aagctaaaagaaaagtatgcagatttcctagagatgttcaaaaatatggaaaaactatct
ttaatattaagaaaacatcgagaaaataggggggcaatcgactttgacttcccagaggcg
aaagtaatcctagatgacaaaggaaagccaatcgatgttaagaaatatgaaagacgcatc
gccaatcgaattatagaagaatttatgttggtttgtaatgaaacggtggcagagtatttc
tattggcagaatgtacctttcgtttaccgtgttcatgaagaccctagtttagaaaagctg
gaggagtttaataagtttatccataactttggctatcatttaaagggattaaacacagag
attcatccgaagagtcttcaagaactattaaagaaattggaagggactaaagaagaaaga
ctgatcaatacattgatgctgcgatcccttaaaaaagctagatatgcgggtcataactta
ggtcactttggtttagcagctcagtactattgccatttcacatcgccaatcagaagatat
ccagacttagagatccatcgtatcatcaaagaatctcttcatggaaagctcgttggcaag
agattagaggaactcaacgctaaggttccaatcatagcagatcagtcctctacaagagag
agagttgcagacgaggcggaaagagaaactgttgatctgaaaaaagcagaatatatggca
gataaaattggagaagagtacgagggtattatttcaggcgttacttccttcggtatgttc
gtagaactggataatacaattgaaggattaataaggttaagctccttggtagatgattat
tatatctatgatagtgagcatcacctactgctaggagaaagaaagaaaaagatttatcga
atgggagataccattaaaataaaggtgagtagagtagatatcgcacaaaaagaaattgat
tttgtattggcagagtaa
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