Alkaliphilus oremlandii: Clos_0979
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Entry
Clos_0979 CDS
T00607
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
aoe
Alkaliphilus oremlandii
Pathway
aoe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aoe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Clos_0979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoe03019
]
Clos_0979
03400 DNA repair and recombination proteins [BR:
aoe03400
]
Clos_0979
Enzymes [BR:
aoe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Clos_0979
Messenger RNA biogenesis [BR:
aoe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Clos_0979
DNA repair and recombination proteins [BR:
aoe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Clos_0979
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HTH_40
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
GerE
Sigma70_r4_2
Orbi_VP4
UPF0561
DUF6115
HTH_38
Motif
Other DBs
NCBI-ProteinID:
ABW18526
UniProt:
A8MFY8
LinkDB
All DBs
Position
1073601..1075838
Genome browser
AA seq
745 aa
AA seq
DB search
MNKAIEVLKKYYGYDNFRDGQDEIIDHILSGRDVLTIMPTGGGKSLCYQIPAMIMDGTAI
VVSPLISLMKDQVDTLQQMGIPAAFINSSLAFSESQRIFEEAKRGEYKLLYVAPERLESE
GFTELIRSIKISMVAVDEAHCVSRWGHDFRPSYLRIKNLRSLSEDHPVLAAFTATATSEV
KEDIIDLIGLEGPYEITTGFDRENLKFEVVRVKEKLSYILKYVSEHKGKAGIIYCLTRKL
TEQVCSELVRAGFNAIQYHAGLGDVQRSKNQDDFLFDNAEIMVATNAFGMGIDKLDIRYV
IHYNMPQNIEAYYQEAGRAGRDGEPSECILLFSPQDIVMNNFLIDNGTTDGIGRTKEYDK
LQDMISYCNTDKCLRKYLINYFDSDYDREECNNCGNCLNEIESRDITIEAQKILSCIYRM
GGKFGSNLVIDVLRGSNGQRIRSLNFHKLSTYGIMKDCSKDFLREIISYMIAEGYIHVSR
DQYPVLSISPDGAMVLKGKQQVTIRKVLSEKRKFAETTNTHTEYNRNLFEELRALRKGIA
DQLRLPPFVVFSDATLKEMCVQFPQTKVEFLQIKGVGEVKAEKYSAPFAEAIQNYVEKNN
LNLQELKSEKTDQDTEIDRSDKENVEKQPKEPTREISYRMYREGKSIPEIAKARELKETT
VESHIENCARLGYEINYRDFISEEIEALIIHTYRKKRGAKLKEMKDSLPDEITYTEIRFA
LCKFQLEESESPKAQYEGDKTLHQL
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
ttgaataaagccattgaagttttaaaaaaatattatgggtatgataattttagagacggg
caggatgaaattatagatcatattttatctggaagagatgttctaacaataatgcctaca
ggtggcggtaagtccctgtgctatcaaatacctgctatgatcatggatggtacggcaatc
gttgtttcacctcttatttctctgatgaaggatcaagtagatacattacagcaaatgggc
ataccagcagcttttattaatagttcacttgctttttcagagagtcagagaatattcgaa
gaagccaaaagaggggaatataagcttctctatgtggcgcctgaaagattggaatcggaa
ggcttcacggagctcataagaagtattaaaatttctatggttgctgtagatgaagcccat
tgcgtatcacggtggggacacgattttagaccgagctatcttcgcattaaaaatctaaga
agtttatcggaagatcatcctgtacttgcggcattcactgccacagcaacatcggaagtt
aaagaagatatcatcgatttaatcggtcttgaaggtccgtatgaaatcaccactggattc
gaccgggaaaatctaaaatttgaagttgtaagggtaaaagagaagctctcatatattttg
aaatatgtaagtgagcataaggggaaagctggcattatctattgcttgacaagaaagcta
acagagcaggtatgctccgagcttgttcgtgctggcttcaatgccattcagtaccatgct
ggattaggagatgtacaaagaagcaaaaaccaagatgattttctttttgataatgctgaa
attatggtagcgaccaatgcctttggcatgggcatcgacaaactagatattagatatgta
attcactacaatatgccacaaaatatagaagcctactatcaagaggctggaagagctggg
cgtgacggcgagccttcggagtgtattttgctgttcagtcctcaagatattgtaatgaat
aattttttaatcgacaacggtactacagatggtataggaaggaccaaggaatacgacaag
ctgcaggatatgatcagctattgcaacacagataaatgtttgagaaaatatctgatcaat
tactttgattctgattacgacagggaagaatgtaataactgtggcaattgtctcaatgaa
atagaaagtagagatatcaccatagaggcacagaaaatattatcctgcatctatcgaatg
ggtggaaaatttggcagtaatcttgtaatcgatgtgctaaggggcagcaatggtcagaga
ataagatctttaaattttcacaagctaagtacatatggcattatgaaggattgcagtaaa
gattttttacgagagattatttcctatatgatagcagagggctatattcatgtaagcaga
gatcaataccctgttcttagtatatctcctgatggtgccatggttttaaaggggaaacag
caggttacaataagaaaggtattgtctgaaaaacgaaaatttgcagaaacaacgaatacc
catactgaatacaatagaaatctctttgaggagctcagggctttaagaaaaggaattgca
gatcagttgagattaccacctttcgtcgtattttccgatgcaaccttaaaggaaatgtgc
gttcaatttccacagacaaaagtggaatttctccaaataaagggtgtaggagaggtaaag
gcagaaaaatacagtgcgccttttgcagaagccatccaaaattatgtggagaaaaacaat
ctaaaccttcaagagctaaagtcagaaaagacagatcaagatactgaaattgatcgttct
gataaggaaaatgtagagaaacagcccaaggagcctacgcgagagatcagctatcgaatg
tatcgggaaggaaaaagcattccggagattgcaaaagctagagaattgaaggaaactact
gtagaatcccacattgaaaattgtgcaaggctgggctatgaaattaactatagagatttt
atatcggaagaaatagaagccctcatcatccatacctataggaaaaaaagaggagcaaag
ctgaaagagatgaaggacagtctaccagatgaaataacttatacagagatacgatttgca
ctgtgtaaattccagttggaagaaagcgaaagccctaaggcgcaatatgaaggagataaa
accttacaccaactgtaa
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