Alkaliphilus oremlandii: Clos_2258
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Entry
Clos_2258 CDS
T00607
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
aoe
Alkaliphilus oremlandii
Pathway
aoe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aoe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Clos_2258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aoe03400
]
Clos_2258
DNA repair and recombination proteins [BR:
aoe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Clos_2258
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Clos_2258
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
P-loop_SecA
AAA_22
UvrD-helicase
Kinesin
AAA_7
HEM4
SWI2_SNF2
Microtub_bd
AAA_5
DUF87
Motif
Other DBs
NCBI-ProteinID:
ABW19791
UniProt:
A8MJ09
LinkDB
All DBs
Position
complement(2410709..2412688)
Genome browser
AA seq
659 aa
AA seq
DB search
MEKFQIVSNYRPTGDQPKAIEALANGINKGTKHQVLLGVTGSGKTFTMANVIEKVQKPTL
VIAHNKTLAAQLCSEFKEFFPNNAVEYFVSYYDYYQPEAYVVTSDTYIEKDASINDEIDK
LRHSATSALLERRDVIIVASVSCIYGLGDPTEYKNLMVSLRSGMEKSREEVLKQLVDIQY
ERNDINFIRGTFRVRGDVVEVFPASSSENAIRLEFFGDEIERILEVNSLTGEIIGVRQHV
SIFPASHYATGADKVENAIKAIEVELEERIKEFKGEEKLIEAQRIGQRTMYDIEMLREVG
FCQGIENYSRHLTSREPGSRPYTLMDYFPEDYLIIIDESHVTVPQIRAMYGGDRSRKESL
VNYGFRLPSAYDNRPLNFEEFEGLVNQIVYVSATPGPYEMDKTQNIIEQVIRPTGLLDPI
IDIRPIKGQIDDLVGEIRKRTEKNQRVLVTTLTKKMSEDLTDYLKEIQIKVKYLHSDIKT
IERMEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTIGRA
ARNLEGKVIMYADRITRSMQVAIDETNRRRKLQEEYNIAHNIQPKSIEKGIRDVIEATKV
AEEEVKYGKEASKNNLSKEELEKVLQDLETEMLQAATDLQFERAAELRDKIQSLRAQQK
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atggagaaatttcagattgtatccaattatcgtcctacgggagatcagccaaaagccata
gaagctttggcaaatggcattaataaagggactaagcatcaggtgttactgggtgttaca
gggtcaggaaaaacctttaccatggccaatgtcatagaaaaggtgcaaaaaccgacttta
gtcattgcccataataaaactttggcagcccagctatgcagtgagtttaaagaattcttt
ccaaataatgctgtagaatactttgtgagctattacgattattatcagccagaggcttac
gtcgttaccagcgatacctatatagagaaggatgcatccatcaatgatgaaatcgataag
ctccgccattcagccacatcagctttactggaaagacgagatgtgattatcgttgccagt
gtttcttgtatctatggcttgggagatcctacggaatataaaaacttaatggtttccctc
cgttctgggatggaaaaatccagggaagaagttttaaagcaattggtagatattcaatat
gaaagaaatgatattaattttatccgaggaacttttagagtgcgcggcgatgttgtagag
gttttccctgcatcctcctcagaaaacgccattcgactggagttttttggagatgaaata
gagcgaatattagaagtgaactctttaacgggagaaattattggcgtaaggcagcatgtg
tctattttccctgcttcccactatgctacaggagcagacaaggtagagaacgccatcaaa
gccatcgaagtggagcttgaagagagaattaaggaatttaaaggagaggaaaagctcatt
gaagctcaaagaataggtcagcgcaccatgtacgacattgaaatgctcagagaagttggt
ttttgtcaaggcatcgagaactactccagacatttaaccagtagagagcctggcagcaga
ccctataccttaatggactatttcccagaggattacttaatcatcatagatgagtcccat
gttacggttcctcaaattcgagccatgtatggtggcgatcgctctagaaaggaatccttg
gtgaactacggctttcgattaccatctgcttatgataatcgaccattgaactttgaagag
tttgaaggtttagtaaatcagattgtatacgtcagtgcaacgccaggtccatacgaaatg
gacaagactcagaatatcatagagcaggtcatacggcctacgggtctcttggacccaatc
atcgatattcgtccgattaaagggcaaatagatgatctcgttggagaaataagaaaaaga
actgagaaaaaccagagagttttggttacaacactgactaaaaaaatgtcggaagattta
acagattatttaaaagaaattcaaattaaggtaaagtacttacattcagatattaaaacc
attgagagaatggagatcataagggatcttcgtttaggagagtttgatgttttagtgggt
atcaatctattgagagagggtcttgatctaccggaagtatccttagttgctatattggat
gcggataaggaaggctttttaagatctgaaacctcattgatacaaaccattggtagggca
gctagaaatctagaaggtaaggttattatgtatgccgatcggattacgagatccatgcag
gttgcaattgacgaaaccaatcgaagaaggaagctgcaagaggaatataatatagctcat
aatatacagccgaaatccattgaaaaggggattcgtgatgtgatcgaagcaacgaaggtt
gcagaggaagaagtgaaatatggaaaagaagcaagtaagaataatttaagcaaggaagaa
ctggagaaggtccttcaggatcttgaaactgaaatgcttcaggctgccaccgatttacag
tttgagcgagcggcagaattgagggataaaattcaatcattgcgagcacagcaaaagtag
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