Alkaliphilus oremlandii: Clos_2340
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Entry
Clos_2340 CDS
T00607
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aoe
Alkaliphilus oremlandii
Pathway
aoe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aoe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Clos_2340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aoe03019
]
Clos_2340
03009 Ribosome biogenesis [BR:
aoe03009
]
Clos_2340
Enzymes [BR:
aoe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Clos_2340
Messenger RNA biogenesis [BR:
aoe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Clos_2340
Ribosome biogenesis [BR:
aoe03009
]
Prokaryotic type
rRNA helicases
Clos_2340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
GTP_cyclohydro2
HEM4
Cas3-like_C_2
mRNA_decap_C
Flavi_DEAD
Frataxin_Cyay
AAA_22
BT4734-like_N
Motif
Other DBs
NCBI-ProteinID:
ABW19872
UniProt:
A8MJ90
LinkDB
All DBs
Position
complement(2511770..2513155)
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AA seq
461 aa
AA seq
DB search
MKSEFLNLGIIEEIVEPLRAEGIVEPTPIQRESIPVALQGKDIIAQAQTGTGKTFAFMLP
ILQKINKNQKDVQALILAPTRELALQITTEAKKIAKGLDVNVLAVYGGQDVEKQIHKLKG
GMHVVIATPGRLLDHLRRGTMHLKAVNQLVLDEADQMLTMGFLEEVEYIIKKTPQNRQLM
LYSATIPKGIRALTNRYMKNPVEIRIHSNKVTLDEIKQLVVETTDRHKQEALMHMIKQEN
PFLAIVFCRTKRRVKTLSDALIEKGFSCDELHGDMTQAKREKVMKEFRNAKLQILVATDV
AARGIDVEGITHVFNYDIPQDVEGYIHRIGRTGRAGDKGMAITFAAPKDRDSLAMIERGI
NQKIVKITFKPEGRVESIEETFEREAKKREERKNKDNKFKDNQRKNGDKNSAKGRKTESK
RYDSNKNDKNDSKGNRSGNYGKGRENAGPNSRKGSSRRGNR
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcagagtttttaaatttaggaattatagaagaaatagtagagcccctaagggca
gaggggattgtagagccgacgccgatccaaagagaatccatcccagttgcgctacaggga
aaagatattattgcgcaggcacagaccggtacgggaaaaacatttgctttcatgctgcca
atcctacaaaagatcaataagaatcaaaaagatgtacaggctttaatccttgcacctaca
agagaattagcccttcaaattacgacagaggctaaaaaaatagcgaagggattggatgtt
aacgttcttgctgtttatggtgggcaggacgtagaaaaacagattcataaactaaagggt
ggaatgcatgttgtcatcgctacaccaggtagattattagatcatttaagaagaggaacc
atgcacttaaaggcagtgaatcagctggttttagatgaagccgatcaaatgctaaccatg
ggatttttagaagaggtagagtatattattaaaaagacgccacaaaatagacaactgatg
ctttattctgctacgatcccgaaaggaatcagagctttaaccaatcgatatatgaaaaat
cccgtagaaatacgaattcatagcaataaggttacattggatgagatcaaacagcttgta
gtagagactacggatcgacataaacaagaagctttaatgcatatgatcaaacaggaaaat
cctttcctagccattgttttttgccgtacaaagcgtagagtgaagacactgagcgatgcg
ttaatagaaaagggcttctcctgtgatgagcttcacggggatatgactcaggcaaagaga
gaaaaggtcatgaaagagtttaggaatgccaaactacagatattagtagctacagatgtt
gcagcaagaggaattgacgttgaagggatcactcatgtattcaactatgatatccctcag
gatgtagagggttatatccatcgtatcggtagaaccggtcgtgcaggagataaaggtatg
gccattacctttgcggcaccaaaggatcgagattctttagctatgatcgagagagggatc
aatcagaagattgtaaaaattacatttaagccagagggaagagttgagtccatagaagag
acctttgaaagagaagcaaagaaaagggaagagagaaaaaataaggataataaatttaaa
gacaatcaaagaaaaaatggggataaaaactctgccaagggtagaaaaacagaaagtaag
agatatgacagcaataaaaatgataagaacgacagcaaaggcaatagaagtgggaattat
ggtaaaggtagagaaaatgctggacctaattcgagaaagggtagctcaagaagaggaaac
aggtaa
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