Asparagus officinalis (garden asparagus): 109819489
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Entry
109819489 CDS
T05243
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03013
Nucleocytoplasmic transport
aof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109819489
03015 mRNA surveillance pathway
109819489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109819489
Enzymes [BR:
aof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
109819489
5.6.2.5 RNA 5'-3' helicase
109819489
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109819489
mRNA cycle factors
Common to processing body (P body) and stress granule
109819489
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NPHP3_N
NAT10_TcmA_helicase
UvrD-helicase
nSTAND3
ATPase
SRP54
PhoH
AAA_22
AAA_16
AAA_25
AAA_32
AAA
Motif
Other DBs
NCBI-GeneID:
109819489
NCBI-ProteinID:
XP_020240813
LinkDB
All DBs
Position
8:2504224..2524990
Genome browser
AA seq
1221 aa
AA seq
DB search
MAAQAANLFETASQPDTTAPTPSTPHSRIHPLPPPVNDSINSSASASASSSPANKTRALD
ALTSGIGGLNFEETGDDEGFEFNKGDAFLEHACRYCGVSNPACVVRCNIPSCRKWFCNSR
GNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLL
CREPCLNVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEEL
WKTNPDASFEDLEKPGVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDS
VTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDTAHPAWQSVGHVIKLTAQE
EVALELRANQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHE
VELQVVRNTLPRRFGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSASIVYHM
AKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLD
TSEKSELHKLQLLKDEQGELSSSDEKKFKALKRATEREILQSADVICCTCVGAGDPRLSN
FRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFER
LVLLGLKPIRLQVQYRMHPCLSEFPSNSFYEGTLQNGVTVNERQTTGIDFPWPVPTRPMF
FYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVIPNQIGVITPYEGQRAYIVNYM
ARNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRAR
FGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFF
GGGPGMVSSDSFGSINSSSPSGDKRGGRSKGHLYMPFGPTSGHKPGMHSAGSLPRIPHPP
FPGGPHSQPYAIPTRGAVHGPIGAVPQVPQPGNRGFGAGRGNAGGPIGGHLGHHQSAQQA
VGGVGSFNFPALDNPNSQPSVAGPLSQSGLMTQAPGQGLSQTFRDGFSMGGMSQEFLGDD
FKSQGSHVAYNIADFSTQASQGGYGVDYMTQRHTGYPGSYLNQNTQPGYSHLGTANDFGS
QDYMAHGSQGLFTQAGFNDPLQDESSQSHFGIAGPGPLQSQAANPLYSQPFSPYNATSLN
MQQQPQQQSQSSQNQKLNFNG
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atggctgcacaagcggccaacctctttgagaccgcatcccaaccggacaccacggcgccg
acgcctagcaccccccattctcgaattcatcccctaccgccgcccgtcaacgactctatc
aattcctccgcctcggcctccgcctcctcgtctcccgccaacaagaccagggccctcgat
gccctaacctctggaatcggagggttgaacttcgaggagacgggagacgacgaggggttc
gaattcaataaaggcgatgcctttttggagcatgcatgtagatactgtggggtgtcgaat
ccggcgtgcgttgttagatgcaatataccttcgtgccgaaagtggttctgtaattcgagg
ggtaatacttcgggttcgcacatcgtcaaccatttggttcgagcaaaacataaggaagtt
tgtctccacaaagacagccctctaggggaaacaatcctggagtgctacaactgtggctgt
cggaacgtattccttcttggatttatatctgcaaagacagaaagtgttgttgttctcttg
tgcagagagccttgtttgaatgtcaatgcactgaaagacatgaactgggatctgagccag
tggtgtccccttatcgatgatagatgttttctccagtggcttgttaagataccttctgag
caggaacagctaagggcacggcaaattagtgctcagcaaataaacaaggtggaagaactt
tggaagacgaaccctgatgcttctttcgaggatcttgagaaacctggtgtagatgatgaa
cctcaacctgtcgccctgaagtatgaagatgcttaccagtatcaaaatgtatttgctcca
ttgattaaacttgaagctgattatgacaagatgatgaaagagtcacaaagtaaagatagt
gtaacaattcgttgggatattggtcttaacaagaagcgagttgcttattttgtttttccc
aaggaagataatgaattacgtttggttcctggagatgagttgcggctacgatattcagga
gatacagcacaccctgcatggcaatctgtgggacatgtgatcaagttgactgcccaagaa
gaagttgcccttgaactccgtgccaaccagggtgttcctgttgatgtgaaccatgggttc
agtgttgattttgtttggaagagtaccagctttgatcggatgcaaggagcaatgaaaact
tttgctgtagatgaaaccagtgttagtgggtacatataccatcacttattaggtcatgaa
gttgaacttcaagtcgtccgcaacactttacctcgacgctttggtgctccaggcctacca
gaattaaatgcatctcaggttttcgctgtcaagagtgtccttcagaagccaattagttta
attcagggtcctcccggtacagggaaaaccgtcacatctgcatctatcgtgtatcacatg
gctaaacaaggccaaggccaagttttggtttgtgctccaagcaatgttgccgttgaccaa
ttggcagagaagatcagctccactgggttgaaggtcgttaggctttgtgccaaatcaaga
gaggccgttagctcacccgtggaacacttgacacttcactatcaggttcgacatcttgat
acatctgagaagagtgaacttcataagctgcaactattgaaagatgaacaaggagagctc
tcaagtagcgatgaaaaaaagttcaaggcattaaaacgggctactgaaagagagattcta
caaagtgctgatgtaatttgttgcacttgtgttggtgctggagatcctcgactttccaat
ttccggttccgccaggttctaattgatgaatctactcaggcaacagaaccagagtgtctt
attccccttgtccttggagtcaaacaggtggtacttgttggtgatcactgccagcttggt
ccagttattatgtgtaaaaaggcagctcgtgctggcttagcacaatctctatttgagcgc
cttgtgcttcttggattgaaaccaatcagattgcaggttcaatatcgaatgcatccttgc
ctgtctgaatttccttctaacagcttttatgaaggtacacttcagaatggagtaaccgta
aatgaaaggcagacaactggtattgattttccttggccagttcctactcgtcctatgttt
ttctatgttcagatgggacaagaggagataagtgcgagtgggacatcctatttgaacaga
actgaggctgcaaatgttgaaaaaatagtaacaacctttttgaggagcggcgtaattcct
aatcagattggcgtcattacaccttatgaaggacaacgggcatacattgtaaactatatg
gcaaggaatggatctcttagacagcaactttacaaagaaatagaggttgcaagtgttgat
tcctttcaaggaagggagaaggattacataattttatcgtgtgtaagaagcaatgagcat
cagggtattgggttccttaatgatccgcgtaggctgaacgttgcactaactcgagctcgt
tttggtattgtcattctgggaaacccgaaagtcttgagtaagcagcctttgtggaatgga
ttattgacacactataaggagcatgagtgccttgtagaaggacctctgaacaatttaaag
cagagtatggttcagtttcaaaagccaaagaagatctacaatgatcgcaggcttttcttt
ggaggtggtcctgggatggtttccagtgatagctttggttccatcaattcttcaagccct
agtggtgataagcgaggaggacgcagtaaaggtcatctttacatgccatttggaccaacc
agtggtcataagcccggaatgcactcggcaggatccctccctcgcatacctcatccacca
tttcctggaggtccccattctcagccgtatgcaattccaactcgtggagctgttcatgga
ccaataggtgcagttcctcaagttcctcaaccggggaataggggttttggggctggtcgt
ggcaatgctggtggccctattggtggtcaccttggacatcatcaaagtgcccaacaagct
gtgggtggtgttggttcttttaatttccctgctctggataatcctaatagccaaccctct
gttgcgggtccattatcccagtctggacttatgactcaggcaccaggtcaaggacttagc
caaacgttccgtgatggattttctatgggtggcatgtctcaggaatttttgggtgatgat
ttcaaaagccagggatcacatgttgcatataatattgcagatttttctactcaggcttct
caaggtggatatggtgttgattatatgacacagagacatactgggtatcctggtagttat
ctgaaccagaatacccagccaggatattcccatttgggcactgcaaatgattttggatct
caggattacatggctcatggttcccaaggattattcacgcaagctggattcaatgaccct
ttgcaggatgagtcttctcagagccactttgggattgctggacccggccctcttcagtct
caggctgcgaaccctctttattcacaacccttcagcccgtacaacgccacatccctgaat
atgcagcagcagcctcagcagcagagccagagctctcaaaaccagaaacttaactttaat
ggctga
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integrated database retrieval system
