Asparagus officinalis (garden asparagus): 109819685
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Entry
109819685 CDS
T05243
Name
(RefSeq) RNA-binding protein 8A-like isoform X1
KO
K12876
RNA-binding protein 8A
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03013
Nucleocytoplasmic transport
aof03015
mRNA surveillance pathway
aof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109819685
09122 Translation
03013 Nucleocytoplasmic transport
109819685
03015 mRNA surveillance pathway
109819685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109819685
03041 Spliceosome [BR:
aof03041
]
109819685
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
109819685
Spliceosome [BR:
aof03041
]
Complex C
Other components
EJC/TREX
109819685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_5
RRM_7
Motif
Other DBs
NCBI-GeneID:
109819685
NCBI-ProteinID:
XP_020241091
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All DBs
Position
8:115980694..115987944
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AA seq
201 aa
AA seq
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MAVNGADVEVVDFEPDEDDLMDEDAGADVDAGSTVPRLRSAIAPAAGDLSGGPKKTKGRG
FRDEATADRSSRLAGKDFDSLDSDGGPGPLRSIEGWIVLVTGVHEEAQEDDLHNAFREFG
QIKNLHLNLDRRTGFVKGYALIEYESYNEAHDAIQALNGSELLTQTIYVDWAFSNGPFKR
RNMRRRSPRAHRSRSPPRRRY
NT seq
606 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgaatggggctgacgtggaggtggtcgatttcgagcccgacgaggacgatcta
atggacgaggacgccggcgctgacgtggacgccggctcaaccgtccccaggctgagatcc
gccatcgctcccgccgccggcgatctctccggtgggcccaagaagacgaaagggaggggt
tttagagacgaagccaccgccgatcgaagcagtcgcttggcgggaaaagacttcgattcc
ctcgattccgatggaggccccggcccccttcgatccatagaaggatggattgttctagtc
actggagttcatgaagaggcacaagaagatgatctccacaacgccttccgtgaatttggg
cagataaaaaatctgcacttaaatctggaccgtcgcactggatttgttaagggatatgca
ctgattgaatatgagagctacaatgaagcacatgatgcaattcaagcacttaatgggtct
gagcttcttactcaaaccatttatgttgactgggcattcagcaatgggcctttcaagcgt
agaaacatgcgaaggagatccccacgtgcacaccgttcaaggagtccaccaaggaggaga
tactga
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