Asparagus officinalis (garden asparagus): 109819838
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Entry
109819838 CDS
T05243
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
aof
Asparagus officinalis (garden asparagus)
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aof03021
]
109819838
03036 Chromosome and associated proteins [BR:
aof03036
]
109819838
Transcription machinery [BR:
aof03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
109819838
Chromosome and associated proteins [BR:
aof03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
109819838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
HTH_44
HHH_9
SH2
S1
S1_RRP5
Motif
Other DBs
NCBI-GeneID:
109819838
NCBI-ProteinID:
XP_020241360
LinkDB
All DBs
Position
8:complement(114284697..114294572)
Genome browser
AA seq
1602 aa
AA seq
DB search
MGGRTVVSDDEDEIEEEEDGREEKEAVEVDERDDEDDDEEDEEGQDEYEKDDFIVDDEEE
VEEDEEDGKKDDSDGERHRKKKKKKRESERNYELDEDDYELLEDNNITGFHRPKPGSKFK
RLKKAGRGAEGEERPGFSDEEEFDKYNHGGQRTAEEKLKRSLFGDDEGVPLEDIAEEQEQ
QEEEDEEIGEDDEMADFIVDEEDVDEDGAVVRKKKIKKRKVRQAPGVSSSALQEAHEIFG
DVDELLMLRKQGIARAASDAGGLGEKRLEDEFEPFILSEKYMTHKDDKIRETDVPERIQL
SEEVTGSPLIDDTSIEEESEWIHNQLLAAAAIPPQVAEMQAIKEKEIDKDDIGRVLTMMH
GQKLDLPFIAMYRKELCLSLLKDSDESSVGGEETPRIQWHKLLWTVHNLDKKWLLLQKRK
IALQMYYNKRFDEEARRIDDESRLELNQKIFESIIKVLKNANSEREVDDVDAKFNLHFPP
GEVEVEEGQFKRPMRKSLYSTCYKAGLWEVANKFGYSSEQLGSHLMKETTSSDLKDGTET
PEEVAANFTCAMFETPEDVLKGARSQAAVEIGCEPNVKKHIRGIFMDNAVVSTSPTPEGN
LSIDTHHELAGVKWLRNKPLSKFVDAQWLRIQKAEEEKLLQVTIKLPEHVQEELLNDAKE
NYVSDYVSKSAQLWNEQRKNILQDAFLNIILPSMEKEARALLTVRAKNWLAMEYGRHLWS
KVSVAPYQKKEVDNDTEDESDLRVMACCWGPGKPATTFVMLDSSGEVVDVLYAGSISSRS
QSVADKQRKQLDQQRLLKFMTDHQPHVVCLGTANLSCRPLKDDIYEVIFKIVEDHPRDVS
QDMNINIVFGDESLPRLYENSRISSDQLPAQPGIVRRAVGLGRYLQNPLAMITTLCGPGK
EILSWKLCPLEHFLTDDEKFEMVEQVMVDATNQVGLDINLAASHEWLFAPLQFISGLGPR
KASALQRAFVRAGSIINRKEIPMGKILRKKVFINAVGFLRVRRSGAAAASSHIMDLLDDT
RIHPESYDLAKNLAKDVRAEDFEHGEDEMDDDDLEMAIEHVRDKPEMLKALDIDAYDESY
FRNHGTRKWQTFHLIKMELLHGFQDWRVPFTEPSPEEEFCMLSGETEDSLPVGKLVQVSV
RQAQDGRVFCMFDSGLRGFIMADDFSDKGYEPEKVQEGDVLTCKIKNVNKQRFIVYLTCR
ESELSKRPLYIRNLDPYYKEDEVNRQSEQEKARKEKELAKKNFKPRMIVHPRFQNLTAEE
AKQYLADKDAGESIIRPSSRGPSFLTLTIKIFDDVYAHKDILESGKDHKDITSLLRLGKT
LTIDEKTFEDLDEVMDRYVDPLVSHLKNMLGYRKFKKGKKSEVDELLKAEKAQNPRRIVY
CFGISHEHPGTFILSYIRSSNPHHEYIGLYPKGFRFRKTDFDDIDRLVCFFQKNIDKPPP
DAPIGSVAARVPMKSPSWGSSADDGWRGQTNSERARSGGRSEYRNNYGGDNQDGHPSGLP
RPGRGGRGRGGRGRGRGGRDSRNDDFVSSPKWGGGGSGPRNDDGGGLSSFPGAKVQDSPG
TERFPGGWAGGAGGGASGGSWVSGSNDNGGDGWRGSTARLGA
NT seq
4809 nt
NT seq
+upstream
nt +downstream
nt
atgggaggaagaactgtggtctccgatgacgaagacgagattgaagaggaagaggacggt
cgagaagagaaagaagccgtcgaggtcgatgagagagatgacgaagacgatgatgaagaa
gatgaagagggtcaagatgaatatgagaaagatgacttcatagtggatgatgaagaagaa
gtggaggaagatgaagaagatgggaagaaggatgatagtgacggagagagacataggaaa
aagaagaagaagaaaagagagtcggagagaaactacgagcttgatgaagatgattatgag
ttgcttgaggataataatataactggttttcatcggccaaaacccggaagcaagtttaag
cgcttgaagaaggcaggaagaggtgctgagggagaggagaggcctgggttttctgatgaa
gaagaattcgataagtacaaccatggtggccagaggacagctgaggaaaaacttaaacgc
agtttgtttggtgatgatgaaggcgtaccactggaggatattgctgaagaacaggagcaa
caggaagaggaggatgaagagattggtgaagatgatgagatggctgactttatcgttgat
gaggaagatgttgatgaagatggtgcagttgtgaggaagaagaagatcaagaaaaggaaa
gtgcgacaagcaccgggcgtttcatcaagtgcacttcaggaagctcatgaaatatttggg
gatgttgacgagctcttgatgctgcgcaagcaaggcattgcaagggctgctagtgatgct
ggtggtcttggggagaagaggttggaagatgagtttgagcctttcattctttcggagaag
tacatgacacataaggatgataaaatcagggagacagatgttcccgagaggattcagttg
tccgaagaagttaccgggtctcctctaatagatgatacaagtatagaagaggagagtgaa
tggatacacaaccagttacttgctgctgctgccattccacctcaagttgcagaaatgcag
gcgatcaaagagaaagaaattgataaagatgacattggacgtgtcttgacaatgatgcat
gggcagaaattagatcttcctttcattgccatgtatcggaaggagctatgccttagtctg
ttgaaggattcagatgagtcgtcagtgggtggagaagaaacacctagaatacagtggcat
aagttgctctggactgttcataatttggacaaaaagtggttactccttcagaagaggaag
attgctctccagatgtattacaacaagcgatttgatgaggaagctcgaagaatagatgat
gaatcgagacttgaattgaatcagaaaattttcgagtctatcattaaggttctcaagaat
gcaaattctgaaagagaggttgatgatgttgatgccaagttcaatttgcatttccctcct
ggtgaagttgaggtggaggaagggcaatttaaaaggccaatgcgaaaatcattatatagt
acttgttataaggctggactgtgggaagttgctaacaagtttgggtatagctctgagcaa
cttgggtcacatttaatgaaggagacaacaagttcggacttgaaagatggaactgaaact
cctgaggaagtagctgcaaattttacatgtgctatgtttgagactccagaagatgtgctt
aaaggtgctcgttcacaggctgctgttgagattgggtgtgaacctaatgttaagaaacat
attcgtggcatatttatggacaatgctgttgtctctacaagccctacgccagaaggaaat
ttgtcaatagatactcatcatgagcttgcgggtgtgaagtggcttcgtaataagccatta
tctaagtttgtagatgcacaatggttacggattcagaaagctgaagaagagaagctcctt
caagttaccataaaattgcctgaacatgttcaagaagaattattaaatgatgctaaagaa
aactatgtaagtgattatgttagcaagtccgcacagctttggaatgagcagcgtaaaaac
atactccaggatgcatttttgaacattattctgccttcaatggaaaaagaagcaagagct
ctcttgacagttagggcaaagaactggcttgctatggagtatggaagacatttgtggagt
aaggtctctgttgctccttatcagaaaaaggaggttgacaatgacactgaggacgagtca
gatttacgtgtcatggcctgctgctggggacctggaaaaccagccactacttttgttatg
ttggattcatctggggaagttgtagatgtcttgtatgctggttctattagcagtcgatct
caatctgttgctgataaacagcgcaagcaacttgaccagcaacgtctcttgaagtttatg
acagatcaccaaccacatgttgtgtgcttgggaacagcgaatttgtcttgcagaccgctg
aaagatgatatctatgaggttatttttaagatagtggaagatcaccctagggatgtcagc
caagatatgaatatcaatattgtatttggcgatgaatctttgcctcgactatatgagaat
tcacgaatttcttcagatcagctacctgcccaaccaggtattgttaggcgtgcagtgggt
cttggacggtatcttcaaaacccattggcaatgatcaccacattatgtggaccaggaaaa
gaaattttgtcatggaagctgtgtcctctagagcattttctcactgatgatgaaaaattt
gaaatggttgagcaggtaatggttgatgctaccaatcaggttggtctggacattaattta
gctgctagtcatgaatggctttttgctcctctacaatttatttctggtcttggaccccgc
aaggcttctgcattgcaaagggcatttgtcagggctgggtccattatcaaccggaaggag
attccaatgggcaaaattctgaggaagaaagtttttattaatgccgttgggtttttgcgt
gttcgtcgcagcggggcagcagcagctagtagtcatatcatggatttattggacgacacg
agaattcatccagagtcatatgacctggcaaagaatttggccaaagatgttagagctgaa
gattttgagcacggagaggatgaaatggatgacgatgatctagaaatggcaattgaacat
gtaagagataagcctgaaatgctcaaagcgcttgatattgatgcatatgatgaatcttat
tttagaaatcatggaactagaaagtggcaaacctttcatcttataaagatggagctgtta
catggttttcaagattggcgtgtcccgttcacagaaccaagcccggaggaggagttctgt
atgctttctggtgaaactgaggattccttaccagtaggaaaacttgttcaggtttcagtt
cgtcaagcacaagatggccgtgtgttttgcatgtttgattctggtttgagaggatttatt
atggcagacgatttttcagacaagggttacgaacctgagaaagttcaagaaggtgatgtg
cttacttgcaagatcaagaatgtcaacaaacagaggtttattgtgtacctgacatgcaga
gaaagtgagctaagcaagagaccactttatattcgcaatcttgatccgtactacaaagaa
gacgaggttaaccgacagagtgagcaggagaaggctcggaaagaaaaagaacttgcaaag
aagaattttaagccaagaatgattgtgcatcctcgctttcagaacttgacagctgaagaa
gcaaaacagtaccttgcagataaggatgctggagagagcattattcgtccgagttctaga
ggaccatcatttttgactttaacaataaaaatttttgatgatgtctatgctcataaggac
atacttgaaagtggaaaagatcacaaggatatcacgagcttacttcgtcttggaaaaact
ttaacaattgatgaaaagacatttgaagatcttgatgaggtaatggatagatatgttgat
ccgttggtaagccacctgaaaaatatgcttggttaccgcaaattcaagaaaggcaaaaag
tcggaagttgatgaattattaaaggcggagaaggcacagaatccaaggaggatagtttac
tgttttggcatttctcatgagcatccgggaacatttattttatcatacattaggagctca
aaccctcatcatgaatatattggattgtatcccaagggttttaggtttcgaaagacagac
ttcgatgacattgatcgccttgtgtgtttcttccagaaaaatattgataaaccgccacca
gatgcccctatcggaagtgttgccgcaagggtccctatgaagagcccatcatggggctcc
tctgctgacgatggatggagaggtcaaacaaattcagaaagggcgcgatcaggaggaaga
tctgagtataggaacaattacggcggtgacaatcaggatggccatccaagtgggcttcct
cgtccagggcggggaggtcgtgggcgtggcggtcgtggaagaggacgtggtggccgggat
tcaagaaacgacgatttcgtttcttcgcctaaatggggcggcggtggctcaggtccaaga
aatgatgatggtggtggcttgagcagctttcctggggccaaagtacaagactcccctggt
acggagagatttcctggcggctgggctggtggggctggtggtggtgccagtggcggttca
tgggtcagtggtagtaatgacaatggtggtgatggttggcgaggtagcactgcgcggctg
ggtgcctaa
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integrated database retrieval system