KEGG   Asparagus officinalis (garden asparagus): 109819980
Entry
109819980         CDS       T05243                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 4-like isoform X1
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
aof  Asparagus officinalis (garden asparagus)
Pathway
aof03020  RNA polymerase
aof03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:aof00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    109819980
  09124 Replication and repair
   03420 Nucleotide excision repair
    109819980
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aof03021]
    109819980
   03400 DNA repair and recombination proteins [BR:aof03400]
    109819980
Transcription machinery [BR:aof03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     109819980
DNA repair and recombination proteins [BR:aof03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      109819980
SSDB
Motif
Pfam: RNA_pol_Rpb4 Polysacc_deac_2 DnaB_2 LpxI_N
Other DBs
NCBI-GeneID: 109819980
NCBI-ProteinID: XP_020241630
LinkDB
Position
1:complement(130425235..130441916)
AA seq 260 aa
MAEKGGKGFPMSRKKVAFKSPAPSQETQKKKGSVPMEEDGPVQIDSDSESEGFVNSLNET
LSKGNGKAPKETAKSGMKSSLDGLKTGTKTSLEAPATKGSSGKGGKAYSSGKAGGKGGLP
RASAVKPPVTEVELKLEMDIPEDARVIMDCEAATILQGIQDSLSVLSDDPSIKMPPFFNK
ALEYCKGRNNYTNAESVRQVLETLKEHGVTEGEICMIGNAFPETIAEVYALIPSLKANKH
KIEGPIQEVLVNLAGLRRVE
NT seq 783 nt   +upstreamnt  +downstreamnt
atggcggaaaaaggcggcaagggcttcccaatgtccagaaagaaagtcgctttcaaatcc
cccgctcccagtcaagaaactcagaagaaaaagggtagtgttcctatggaggaggatgga
ccggtccagattgattctgactcagaatctgaaggttttgtgaatagtttaaatgaaacg
ttatcaaaaggcaacggaaaagcaccaaaagaaacagcaaagtctggtatgaagtcctca
cttgatggtcttaagacaggcacaaaaacttcactcgaggccccagctactaaagggagt
tcaggcaaaggaggtaaagcttatagctcaggaaaggcaggtggaaagggtggccttccc
cgagcgtcagctgtaaagccccctgtaacagaagtagagctgaaacttgaaatggatatt
ccagaagatgctagggtcataatggattgcgaagcggcaactattttacagggaattcag
gattccctgtctgtattgtcagatgatcccagcatcaaaatgcctcctttttttaacaaa
gcattggagtactgcaaaggaagaaacaactacaccaatgctgaatcagtcagacaagtc
ctggaaactcttaaggaacatggggtcactgagggcgagatatgcatgattggtaacgca
ttcccagagaccattgctgaggtttatgctcttataccttccttgaaggctaacaagcat
aagattgagggacctatccaggaagtgctagtcaacctggccggcctcaggcgtgttgag
taa

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