Asparagus officinalis (garden asparagus): 109820024
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Entry
109820024 CDS
T05243
Name
(RefSeq) WD-40 repeat-containing protein MSI4-like
KO
K10752
histone-binding protein RBBP4
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03082
ATP-dependent chromatin remodeling
aof03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
109820024
03083 Polycomb repressive complex
109820024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
aof03036
]
109820024
Chromosome and associated proteins [BR:
aof03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
109820024
Histone modification proteins
HAT complexes
HATB complex
109820024
HDAC complexes
Sin3A-HDAC complex
109820024
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
109820024
PRC2.2
109820024
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
109820024
Heterochromatin formation proteins
Other heterochromatin formation proteins
109820024
Chromatin remodeling factors
NuRD complex
109820024
NuRF complex
109820024
NuRF complex (fruit fly)
109820024
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_RIG_2nd
WD40_WDHD1_1st
WDR55
Beta-prop_EML
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_DCAF12
Beta-prop_WDR90_POC16_2nd
Beta-prop_SPT8
WD40_RFWD3
ANAPC4_WD40
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
109820024
NCBI-ProteinID:
XP_020241656
LinkDB
All DBs
Position
8:8370389..8398012
Genome browser
AA seq
464 aa
AA seq
DB search
MKDRAKPEKPSVDERYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEKATYKNRQRLY
LSEQTDGSVPNTLVIANIEVVKPRVAAAEHISQFNEESRSPFVKKYKTIIHPGEVNRIRE
LPTNNNIIATHTDSPDVLIWDVEAQPNRHAVFGATESRPDLVLTGHQENAEFALALCRLD
PLVLSGGKDKSVVLWSIQDHISSLSVTTTSRSPGSNSSTKQLPSGDAKNNDSPKIEPRGV
FQGHQETVEDVQFSPSSAQEFCSVGDDSCLILWDARVGTSPAIKVEKAHNADLHCVDWNR
HDENLILTGSADTTVRLFDRRKLTSGAVGSPLHIFEGHKDAVLCVQWCPNKASVFGSAAE
DSFLNVWDYEKVSKKVEDAGIKTLKSSGLFFQHAGHRDKVVDFNWNTEDEWTIVSVSDDC
ASTNGGGTLQIWRMNDLIYRPEGEVLSELNTYKEHILSCAPLRA
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatagagcgaaaccagagaagccgagcgtagacgagaggtacactcagtggaag
tctctggttccggtgctctacgattggctcgccaaccataacctagtctggccctcgctc
tcctgcaggtggggtccacaactagagaaagcaacatacaagaaccgtcaacgtctctac
ctttccgagcagactgatggctcagttccgaatactcttgtcatagcaaacattgaagtg
gttaagccaagggttgcagctgcggagcatatatcccagttcaatgaagaatcacgttct
ccctttgtgaaaaagtacaagactatcatacatccaggagaggttaacagaatcagggaa
ctgcctacaaacaacaacataatagcaactcatacagatagtcctgatgtgctcatttgg
gatgtggaggcacaacccaatcgtcatgctgtttttggagctacagaatctcgtcctgat
ttggtcttgacagggcaccaagaaaatgcagaatttgcactcgccctgtgtcgtttagat
cctctagtactttctggagggaaggacaaatcagttgtcttgtggagcatacaagaccat
atttcttctttatcagttaccacgactagtaggtctcctggatcaaactccagtacaaag
cagctcccaagtggcgatgcgaaaaataatgatagtcctaaaattgaaccacgaggggtg
ttccaaggacatcaagaaaccgttgaagatgtgcagttttctccttccagtgcacaggaa
ttctgtagtgtaggggatgattcttgcctcattctctgggatgctcgcgttggtactagt
cctgccatcaaggtcgaaaaggcgcataatgctgatcttcattgtgttgattggaaccgc
catgatgaaaatcttattttaacaggatctgctgacactactgttcgtttgttcgaccgt
cgtaaactcacttctggtgctgttgggtcacctttgcatatatttgaaggtcacaaagat
gctgttttgtgcgttcagtggtgccctaacaaggcatcagtttttgggagtgctgcagag
gattcttttctaaatgtttgggattacgaaaaggtaagtaagaaggtagaggatgctgga
ataaagacactgaagtcatctggtttattctttcagcatgcaggacacagagataaggtc
gttgatttcaactggaatacagaagatgaatggaccattgttagtgtatctgatgactgt
gcaagcactaatggtggtgggactctgcagatatggcgcatgaatgacctaatctacagg
ccggagggggaagttttgagcgagttaaacacctacaaagagcacatactatcatgtgca
ccacttcgagcctga
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