Asparagus officinalis (garden asparagus): 109820115
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Entry
109820115 CDS
T05243
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03013
Nucleocytoplasmic transport
aof03015
mRNA surveillance pathway
aof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109820115
09122 Translation
03013 Nucleocytoplasmic transport
109820115
03015 mRNA surveillance pathway
109820115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109820115
03041 Spliceosome [BR:
aof03041
]
109820115
03009 Ribosome biogenesis [BR:
aof03009
]
109820115
03012 Translation factors [BR:
aof03012
]
109820115
Enzymes [BR:
aof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109820115
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
109820115
mRNA cycle factors
Stress granule specific factors
109820115
Spliceosome [BR:
aof03041
]
Complex C
Other components
EJC/TREX
109820115
Ribosome biogenesis [BR:
aof03009
]
Eukaryotic type
90S particles
Helicases
109820115
Translation factors [BR:
aof03012
]
Eukaryotic type
Initiation factors
eIF-4
109820115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
AAA
Motif
Other DBs
NCBI-GeneID:
109820115
NCBI-ProteinID:
XP_020241780
LinkDB
All DBs
Position
8:complement(4226162..4232717)
Genome browser
AA seq
409 aa
AA seq
DB search
MAAAVAPPLRNRQGPNRGLDDDNLVFETSAGVEAITSFDKMGIRDDLLRGIYAYGFEKPS
AIQQRAVMPIVSGRDVIAQAQSGTGKTSMIALSVCQMVDTTSREVQALILSPTRELATQT
EKVILAIGDYINVQAHACIGGKSIGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIK
ILILDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTGKFMTDPVRILVK
RDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRSNNF
TVSAMHGDMPQKERDAIMAEFRSGATRVLITTDVWARGIDVQQVSLVINYDLPNNRELYI
HRIGRSGRFGRKGVAINFVRKDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggccgtagctcctcctctccggaatcggcaaggcccaaaccgcgggcttgac
gatgacaacctggtgttcgagacgagcgcaggagtcgaggcgatcacgagcttcgacaag
atggggattcgcgatgatttgttgagagggatctacgcgtacggattcgagaagccctcg
gcgattcagcagagggctgtgatgccgatcgtcagcggtcgagatgtgatcgctcaagct
cagtctgggaccgggaagacctccatgatcgctctctcggtttgtcaaatggtggacacg
acctcgagagaagtacaggcactaattctttcacccacgagagaacttgccactcagact
gagaaagtaatattggctattggtgattacataaatgtacaagcccatgcatgcattggt
gggaagagcataggagaagatatcaggaaactggaatatggtgttcatgtggtttcagga
acacctgggagagtttgtgacatgattaagagaaggaccttgcgtacaagagcgattaaa
attttaatccttgatgaatctgatgaaatgttgagcagaggttttaaggatcagatatat
gatgtctacagatatcttcccccagaccttcaggttgttctgatatctgcaacacttcct
catgaaatattggagatgactggcaagtttatgactgatcctgtaagaatacttgtcaag
cgtgatgagttgacactggagggtatcaaacagttctttgttgctgttgagagagaagaa
tggaaatttgacacgctttgtgatctctatgacaccctaaccatcacccaagctgttata
ttctgcaacacaaaaagaaaggttgactggttgacagaaaagatgcgcagcaacaacttc
acagtctctgctatgcatggggacatgcctcagaaggagcgtgatgcaattatggcagag
ttcaggtcgggtgctactcgggtgttgatcaccacagatgtgtgggctcgaggcattgat
gttcaacaggtgtccctcgtgataaattatgatctcccaaacaatcgagagctctacata
catcgaattggtcgatcagggcgttttgggcgtaagggtgttgccataaactttgtaagg
aaggatgatatcaggatccttagagatattgagcagtattacagtactcagattgatgaa
atgccgatgaatgtggccgatcttatttaa
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