Asparagus officinalis (garden asparagus): 109820258
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Entry
109820258 CDS
T05243
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase COP1-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof04120
Ubiquitin mediated proteolysis
aof04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
109820258
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
109820258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
aof04121
]
109820258
Enzymes [BR:
aof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109820258
Ubiquitin system [BR:
aof04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
109820258
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
109820258
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Beta-prop_EML_2
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WDR55
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
Beta-prop_DCAF4
zf-C3HC4_2
EIF3I
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
Beta-prop_HPS5
zf-C3HC4
Beta-prop_WDR75_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_RFWD3
WD40_like
zf-C3HC4_3
Beta-prop_DCAF12
zf-RING_2
zf-C3HC4_4
zf-RING_UBOX
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_SPT8
zf-RING_5
U-box
Beta-prop_IFT122_2nd
Beta-prop_RSE1_2nd
DUF1664
Motif
Other DBs
NCBI-GeneID:
109820258
NCBI-ProteinID:
XP_020241974
LinkDB
All DBs
Position
8:complement(62673459..62702246)
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AA seq
690 aa
AA seq
DB search
MADTSTGALVPSVVKPEXPTTIGXXXXDAAAAAAAAMAPAEAMAVDGKEEEEARRVFDDK
DLLCPICMGLIKDAFLTACGHSFCYMCIVTHLNNKSDCPCCAHYLTKNHLFPNFLLNKLL
KKTSARQIAKTASPIEHLRMALQQGCEMSIKDLDNLISLLVEKKRKMEQHEAETNMQILL
EFLHCLRKQKLDELNEVQTDLQYIKDDINVVERHRIELYRARERYSVKLRMFLDDPGATK
LWPSTVDKQNNVLISTSRSSHGGTCSGNFPGKRSELKIQGNYQVHQKRDTFSGSDPQHSL
TQSGLAVARKRRVHAQFNELQECYLQKRRHGASQPQRRDDRDTKALNREGYNGGLEDFQS
VLTTFTRYSRLRVIAELRHGDLFHSANIVSSIEFDRDDEFFATAGVSKRIKVFEFSTVVN
EPADVHCPIVEMSTRSKLSCLSWNKYSKNIIASSDYEGIVTVWDVNTRQIVMEYEEHEKR
AWSVDFSRIEPSMLVSGSDDCKVKVWCTKQEASVMNIDMKANICCVKYNPGSSIHVAVGS
ADHHIHYFDLRNTSQPLHVFRGHRKAVSYVKFLSNNELASASTDSTLRLWDVKDNCQVRT
FKGHTNEKNFVGLTVNSEYIACGSETNEVFVYHKAISKPAAWHRFSSSDMDDQDDESGSY
FISAVCWKSDSPTMLTANSQGTIKVLVLAA
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggccgacacgtcgacaggcgctctcgtcccctcggtggtgaaaccagagngccccacg
accatcggcnnnnnnnnnnttgatgctgctgctgctgctgcggcggcgatggcgccagcg
gaggcgatggcggtggacgggaaggaggaggaggaggcgaggagggtgtttgatgataag
gacctgctgtgtccgatctgcatgggtctgatcaaggacgcttttcttaccgcttgtggg
catagtttttgttacatgtgtatcgttacacatctcaacaacaagagtgattgcccgtgc
tgcgcgcattaccttacaaagaaccatcttttccccaatttccttctcaataagctcttg
aaaaagacatcagcccgtcaaattgcaaaaactgcatcgcctattgagcatcttcgtatg
gcattgcagcagggttgtgaaatgtcaatcaaggaccttgataatttgatttctctcttg
gtggagaaaaagcgaaagatggagcagcacgaggctgagactaacatgcaaattttgctt
gagttcctacactgtcttaggaaacaaaagcttgacgagttgaatgaggttcaaactgat
ctacaatatattaaagatgacataaatgttgttgaaagacatagaatagaactataccgg
gcaagagagaggtactcagtgaaattacgcatgtttctggatgatcctggtgcaacaaag
ttgtggccttctactgtggacaaacaaaacaatgtcctcatctctacttctcgtagctct
catggtgggacatgttcaggaaattttccaggcaaaagatctgaactgaagattcaaggg
aactatcaagtacatcaaaagagagatacttttagtggttcggatccacaacattctcta
actcaatctggacttgctgtagctaggaagagacgagtccatgcacagtttaatgagcta
caagaatgctacctgcaaaagaggcgtcatggagctagccagccacagaggcgagatgat
agagatacaaaagcccttaacagagaaggatataatggtggtcttgaagattttcagtct
gtattgaccacatttactcgatacagtcgtctgcgtgttattgctgagcttaggcatggg
gacctatttcactctgctaatattgtgtcgagcatagaatttgatcgtgatgatgagttc
tttgctacagcaggagtttccaaacgaattaaagtttttgaattttcaactgttgtaaat
gaaccagctgatgtacactgtcctattgtagagatgtcgacaagatctaaacttagttgc
ttgagttggaataagtactcaaaaaatatcattgcaagtagtgactatgaagggatagta
actgtttgggatgtaaacactcgccagattgtgatggaatatgaagagcatgaaaagcga
gcatggagtgttgacttttcacggatagaaccatcaatgttggtatctggaagtgatgat
tgcaaggtcaaagtgtggtgcacaaaacaagaagcaagtgttatgaacattgacatgaaa
gcaaacatctgttgtgtgaaatataatcctggatctagtattcatgtagcggttggttct
gctgatcaccacattcactacttcgatttgagaaacacaagtcaaccactccatgttttc
aggggccacagaaaagcagtttcctatgtaaaattcttatctaacaatgagcttgcatct
gcatcaacagacagcacattgcgcttgtgggatgtaaaggataactgccaggtgaggacc
ttcaaagggcacacaaatgagaagaactttgttggccttacggtgaacagtgagtatata
gcttgtgggagtgagacgaatgaagttttcgtgtaccacaaagctatatctaaacctgca
gcttggcatagatttagttcctcagatatggatgatcaagatgatgaatctggatcatat
tttatcagtgctgtctgttggaagagtgatagccccacaatgttaacagccaacagtcaa
ggcactatcaaagttcttgtacttgcagcttga
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