Asparagus officinalis (garden asparagus): 109820450
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Entry
109820450 CDS
T05243
Name
(RefSeq) cell differentiation protein RCD1 homolog
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109820450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109820450
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109820450
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rcd1
Roquin_1_2-like_ROQ
TPR_IPO11
Motif
Other DBs
NCBI-GeneID:
109820450
NCBI-ProteinID:
XP_020242183
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All DBs
Position
8:complement(101232687..101250581)
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AA seq
317 aa
AA seq
DB search
MSNNPPLNLNANLFGSQQPSSSSQSPHQQRERKGASLEQLVLDLCDRDLRESALLDLSKK
REAFQDLAPLLWHSFGTIAALLQEIVSIYPYLAPPNLSPSQSNRVCNALALLQCVASHPD
TRILFLNAHMPLYLYPFLNTTSKTKPFEYLRLTSLGVIGALVKVDDTEVIGFLLQTEIIP
LCLRTMENGSELSKTVATFIVQKILLDDIGLRYICATAERFFAVIQVLSTMIESLSEQPS
MRLLKHIIRCCLRLSDNSRACEALRDHLPKLLTDRTVDRCLREDPATGRWLQQLLLNVYG
EIGAAAFQGGLELMMGN
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataatcctccgctcaatctaaacgctaatctatttggatcccagcagccatct
tcatcctctcaatctcctcatcagcagcgagagaggaagggggcatcgctggagcagctg
gtcctcgatttgtgcgatcgtgatctcagagagtctgcccttctcgatctctcaaagaaa
cgagaggcgtttcaagatttagctccattattgtggcattcatttggaaccattgcagct
ctcctacaggagatagtttccatatacccttatcttgcgcctccaaatctttcaccgagt
caatcaaaccgagtatgcaatgcacttgctctcctccagtgtgtggcttcacacccagat
acaaggattctgtttctcaatgctcatatgccattgtacctgtatccttttctgaatact
actagtaagacgaagccatttgagtacctgagacttaccagcttaggagtaataggggct
cttgtaaaggtggatgatactgaggttattggttttcttcttcaaacagaaattattcct
ctgtgtctgcgcactatggaaaatggtagtgaattgtcaaaaacggtggcgaccttcatt
gttcaaaaaattctgctagatgatatcgggcttcgttatatttgtgccacagcagaacgg
ttctttgctgtaattcaagtgttatcgaccatgattgaatcactttccgagcagccctct
atgaggctactgaaacatatcattcgctgttgcctgaggctatctgacaattcaagggca
tgcgaagctctgagggaccatcttccaaaactgttaactgacaggactgttgaccgctgc
cttcgtgaagatcctgcaactggtagatggctccaacagcttctattgaacgtctatgga
gaaatcggagcagcggcttttcagggaggattggaactgatgatgggaaactag
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