Asparagus officinalis (garden asparagus): 109821016
Help
Entry
109821016 CDS
T05243
Name
(RefSeq) plant-specific TFIIB-related protein 1-like
KO
K03124
transcription initiation factor TFIIB
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109821016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aof03021
]
109821016
Transcription machinery [BR:
aof03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
109821016
Prokaryotic type
Archaeal type
TFB
109821016
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Cyclin_C
HTH_Mga
Motif
Other DBs
NCBI-GeneID:
109821016
NCBI-ProteinID:
XP_020242800
LinkDB
All DBs
Position
8:25225853..25231679
Genome browser
AA seq
539 aa
AA seq
DB search
MHWYWGITRRWITCDPQPSAGHMPCPSTDSYIPSGMNERDYVRTFDSIEADIDAHVVRTG
LDHLGRHTLGADDGTVMMMPALVRNPHGGPTLCMADGAASRSVTECPRCGQDRRSALAGP
RPNLHHPLSLWAHLNPLPLVVPTSFAGKPSTAPQDHDGGEDEDALQPTGFVTLSLLHWSH
PLLARSPLFGGTSPSSSGRCSIIAVTSSSSSALDPAGPLVSVDHLRAYLQIIDVASILGL
DQDIPDHAFQLFKDCSSVTCLRNRSVEALATAALVQAIREAQEPRTAQEISTASNLPQKE
IGKYMKILGEALKLGQPINSNSISVHMPRFCTLLQLNKSAQELAAHIGEVVINKCFCTRR
NPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPPNYTPAV
PPEKAFPMTSITSGRSSTPKVEVPEDKPPELKKSEVREENDRSLASLYTRDLNKAAFWQK
DEAKHVHSEFDQKVNTDSIIDSSTRWMRQTSTSSSQGYNSWQFNVPGSSNARSGKPQNG
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgcattggtattggggtatcacacgtagatggatcacgtgtgacccacagccatcagct
ggacacatgccatgcccatcgacagacagttacatccctagtgggatgaacgagagagat
tacgtccgtacttttgatagcattgaggctgatattgatgcgcacgtcgtgaggacaggt
ctcgatcatttgggcaggcatacactcggcgctgacgacggcacagtgatgatgatgccg
gcacttgttcgcaatccgcatggagggccgacactttgcatggctgatggagccgcgtcc
cgctccgtcaccgagtgtcctcgctgcggccaagatcgtaggagcgcactcgcaggtccc
cgaccaaacctccaccaccccctttccctctgggcccacctcaaccccctccccctcgtc
gtcccgacctcattcgccggaaaaccctcgaccgccccccaagaccacgacggcggcgaa
gacgaggacgccctacaacccacaggcttcgtcacgctctcccttctccactggagccac
cccctcctggcgcgctcgcctctcttcggcggcacctcgccgagctcgagcgggcgctgc
tcgatcatcgccgtgacgagctcgagctcctcggctcttgacccggcggggcccttggtg
tcggtggaccacttgagggcttacttgcagatcatcgacgtggcctcaattttagggctg
gatcaggatatccccgatcacgcgtttcagctgttcaaggattgctcgtcggtgacctgc
ttgaggaaccggagcgtggaggcgctggccacggcggcgctcgtgcaggcgatacgggag
gcgcaggagcccaggacggcacaggaaatctcaactgctagcaaccttccccaaaaggaa
ataggcaagtatatgaaaatactcggtgaagcgttgaaacttggtcaacccatcaacagc
aactcgatatctgttcacatgcctaggttttgtactctcctccagctcaacaaatctgcc
caggagcttgcagcacatattggagaagttgtaatcaataaatgcttctgtacaagaaga
aaccccatcagcatctccgctgctgccatttacctggcatgccaactcgaagacaaacga
aaaactcaagctgaaatctgcaaggtaacaggtctcactgaggtcactcttcgtaaagtg
tacaaagaattattagaaaactgggatgatctacttccacctaactacactccagcagtg
ccccctgagaaagcttttcctatgacttcaataacttctggccgatcatcaactcctaaa
gttgaagttcctgaagataagcctccagagttaaaaaaatctgaggttagagaagaaaat
gaccgttctttggcatcgttgtatactcgtgatttgaataaggcagcattttggcagaaa
gatgaggctaagcatgtacattctgagtttgatcagaaggtcaatacagactccataatt
gatagtagtacaagatggatgaggcaaacgagtacttcatcatctcagggatacaattct
tggcaatttaatgtacctggatcttccaatgctcggtctggaaagcctcaaaatggttag
DBGET
integrated database retrieval system
