Asparagus officinalis (garden asparagus): 109821804
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Entry
109821804 CDS
T05243
Name
(RefSeq) LOW QUALITY PROTEIN: probable CCR4-associated factor 1 homolog 7
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109821804
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109821804
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109821804
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109821804
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
109821804
NCBI-ProteinID:
XP_020243551
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Position
8:complement(62814350..62815304)
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AA seq
231 aa
AA seq
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MDTEFPGVVCRPLGSFKSTSDYNYATLKTNVDMLKLIQLGLTFSDADGNLPDFGTGRXXX
XXXXPQTDVLATDSVELLRQSGIDFKKNNEKGVDAVRFAELLMSSGIVLNDSIQWVTFHS
GYDFGYLLKILTCQNLPDSQAGFFTLIKVYFPTIYDIKHLMRFCNSLHGGLNKLAELLDV
ERVGICHQAGSDSLLTSCTFRKLKESFFNGNTEKYAGVLYGLGVENGQNTH
NT seq
696 nt
NT seq
+upstream
nt +downstream
nt
atggacaccgagttccctggagtcgtctgcagacctctcggatccttcaagtcgacctcc
gattacaactacgcaaccttaaaaaccaacgtcgacatgctcaaattgatccagctcggc
ctcacgttctccgacgccgacggcaacctccccgatttcggcaccggccgcncnnnnnnn
nnnnnnnnnnntccccagaccgacgttttggccacagactccgtcgagctccttcggcag
agtgggatcgatttcaagaagaacaacgagaagggggtcgatgccgtgagattcgccgag
ctgctcatgtcgtcggggatcgtgctgaatgattcgattcaatgggtgacgttccacagt
gggtatgacttcgggtatttgctcaagattctgacttgccagaatcttccggattcgcaa
gctgggttctttacgctgatcaaggtttatttcccgacgatttatgatataaagcatttg
atgaggttctgcaacagtttgcatggagggcttaataagcttgccgagttgcttgatgtg
gagagggtgggtatttgccaccaagctggaagtgatagcttgctgacttcatgcacattt
aggaagctgaaagagagtttctttaatggaaacactgagaaatatgccggtgtgttgtat
ggccttggtgttgaaaatggacagaacacccattag
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