Asparagus officinalis (garden asparagus): 109822081
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Entry
109822081 CDS
T05243
Name
(RefSeq) LOW QUALITY PROTEIN: probable ubiquitin conjugation factor E4
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof04120
Ubiquitin mediated proteolysis
aof04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
109822081
04120 Ubiquitin mediated proteolysis
109822081
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
aof04121
]
109822081
Enzymes [BR:
aof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109822081
Ubiquitin system [BR:
aof04121
]
Ubiquitin ligases (E3)
U-box type E3
109822081
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
109822081
NCBI-ProteinID:
XP_020243831
LinkDB
All DBs
Position
8:complement(35392901..35411206)
Genome browser
AA seq
1026 aa
AA seq
DB search
MATKKPQRSPAEIEDIILRKIFLVSLTDPQPSDPKVVYLEQTAAEILSEDKPLLLSKDLM
ERILIDRLSGDFPSADPPFAYLVGCYQRSVDELKKISAMKDPAVRSQIEAAVKQARKVVA
SYSRIHVGNPDVFVAGAGKGGAAPSSELLGLIFSEVASPMDGESSLASELRSPPGFVDEF
FREGDYDSLELVLRDLYEKLRGSVDRVSALGNFQQPLRALVMLVKYPNCAKALVNHLRWI
PKEKYPWVGEGRVMEVMSVLGAFLHVSALPDVREFRSKPDVGQQCFSESSTRRPADLLSS
FTTIRSVMNILYDGLAEVLLTLLKSVDTREKVMDYLATAIMKNSSRSRMQVDPMQTASSG
MFVNLSAIMLRLCEPFLDANASKRDKIDPNYVFFNNRLDLKELTAICASSEEVTAWIGKX
KTARRMNIAWQNVEGSHALQPIEATTSTGKDKYSFICECFFMTARALNLGLMKALSDFKH
IVQDLSRHEDDLSTYKAMRDQGATPQLEENIKRLEKIIEILSQQKLCYEAQILRDGALLQ
RALSFYRLMVVWLVSLVGGFKMPLPSNCPMEFACMPEHFIEDSMDLLIFTSRIPKALDGF
VLDDFLSFIIMFMASPSYVKNPYLRAKMVEVLNCWMPERSGLSSIASLFEGHQLSLDYLV
RNLLKLYVDIEFTGSHTQFYDKFNIRHNIAGLLEYLWNVPSHRNAWRQIAIKEEKGVYLN
FLNFLINDSIFLLDESLNIILELKGIEAEMSNSAEWERRPAQEREERLRLFHSRENIVRF
DMKLANEDVGMLAFTSEQIPAPFLLPEMVERVASMLNYFLLQLVGPQRKSLTVKDPEKYE
FRPKQLLKQIVEIYVHIARGDGDNIFPAAISKDGRSYNEQLFTAAADILWKIGGDGMIIQ
DFVQLGVKAKTAASEAMDAEAILGDIPDEFLDPIQYTLMKDPVILPSSRMSVDRPVIQRH
LLSDNTDPFNRSHLTPDMLIPDVELKAKIEEFIRSQASKRTKSMTNAVEAGDSSNDVVAM
VTEPSE
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaaaaaaccccagcgatcccccgcagagatcgaagacataatcctccgcaaa
atcttcctcgtttctctcacagatccccaaccctccgaccccaaagtcgtctacttggag
caaaccgccgctgagatcctcagcgaggacaaacccttgctcttgtcaaaagacctaatg
gagcgcatcctcatcgatcgcctctccggcgacttcccctccgccgatcccccctttgcg
tacctcgtcggctgctaccagcgctctgtcgacgagctcaagaagatctcggcgatgaag
gacccggcggtccggtcgcagatcgaggctgcggtgaaacaagcgaggaaggtggtagct
tcttactcgagaattcacgttggaaaccctgatgtgtttgttgctggagcggggaaaggc
ggagctgcgccgagctcggagctgttgggcttgatcttttcggaggttgcgagccccatg
gatggggagagcagtttggcttcggagctgaggtcgccgccgggctttgttgatgagttc
tttagggagggggattacgatagtttagaattggtgttgagggatttgtatgagaagttg
agggggagtgtggatagggtttctgcattggggaactttcagcagccattgagggctttg
gtgatgttggtcaagtatccaaactgtgcgaaggcgctggtgaatcacctgaggtggatt
ccgaaggagaagtatccgtgggtcggggaagggagagtgatggaggttatgagcgttttg
ggggcttttctgcatgtaagcgccctgccggatgttagggagttcagaagcaaaccggat
gtcggccagcagtgcttctcagagtcatcaactcgaagaccagctgatttattgtcatca
ttcacaacaatcagaagcgtgatgaatattttatatgacggcttagcagaagttctcctc
acactccttaaaagtgtagatacgcgagaaaaagttatggattatcttgcaactgcaatt
atgaaaaactcatcgaggtctcgcatgcaggttgatccgatgcagactgcaagttccggc
atgtttgtcaatcttagtgcaataatgcttcggttgtgtgaaccctttcttgatgcaaat
gcgtcaaagcgagataaaattgatccaaattatgtattttttaacaaccgcttagattta
aaggaattgactgctatatgtgcatcatcagaagaagtgactgcatggataggaaaataa
aaaacggcaagacgcatgaacattgcatggcaaaacgttgaaggaagccatgcactgcaa
cccattgaagccacaacctccacgggaaaggataaatattcgtttatttgtgaatgcttc
tttatgactgcaagagcactaaatttgggactaatgaaagcactttcagatttcaaacat
atagtccaagatttgtcaaggcatgaagatgatctgtccacctacaaagccatgagagat
caaggagctactccacaactagaggagaatattaagcgtttggagaaaattattgaaatc
ttgtcacaacagaaactctgctatgaagctcagatactaagggatggggcactacttcaa
cgtgcactatctttttacaggttaatggttgtatggttggtcagccttgttggcgggttc
aaaatgcctttgccgtcaaactgccccatggaattcgcatgcatgccagagcattttatt
gaagacagcatggatttgcttatttttacttctcgaatacctaaagctttggatgggttt
gtactggatgactttttgagttttattatcatgttcatggcaagcccctcttatgtcaaa
aatccttacttgagagcaaagatggttgaagtgttgaattgttggatgccagaaagaagt
ggtttatcctccatagcgtcacttttcgaaggacaccagctatctcttgattatttagtt
cgaaatcttcttaaactttatgtggacattgagtttacaggttctcatacacagttctat
gacaagttcaatatccgccataatattgctgggcttttggagtatctgtggaatgttcct
agccatcgtaatgcatggagacagattgcaataaaagaggaaaagggagtttatctgaat
tttttgaatttcctcatcaatgatagcatctttcttcttgatgagagcctaaatattatt
cttgagcttaaaggaatagaggcagaaatgtccaattctgctgagtgggaacgaagacca
gcacaagagagggaggaaagattgcgcctatttcattcacgggaaaacatagtccgtttt
gacatgaagctggcaaatgaagatgtcgggatgctagcattcacatctgaacaaattcct
gctcctttccttcttccggagatggtcgaacgggtggcaagcatgctaaattactttctc
ttacaacttgttggtcctcaacgaaaatctcttactgtaaaagatcctgaaaagtacgag
tttagacctaagcagctgctaaagcaaattgtcgagatttatgttcatattgcaagaggt
gacggggataacatttttcctgctgcaatctcaaaggatggtcgatcttataatgagcag
ctatttactgctgcagctgatatcctttggaagatcggtggagatggaatgattattcag
gattttgttcagcttggagttaaagccaaaactgcagcttctgaagcaatggatgctgag
gccattcttggggatatacctgacgagtttttggatcctatccagtacactctgatgaag
gatcctgtcattttgccctcatcaaggatgtcggttgatagaccagtaatccaaagacat
ctgctcagtgacaatactgatccttttaatagatcacatcttactccagacatgctgata
cctgatgtcgagctcaaggcaaaaattgaagagtttatcaggtcccaagcttcaaagagg
acaaaatccatgaccaatgctgtggaagcaggagattcttccaatgatgtggtcgctatg
gttactgaacccagtgaatga
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