Asparagus officinalis (garden asparagus): 109822418
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Entry
109822418 CDS
T05243
Name
(RefSeq) LOW QUALITY PROTEIN: UV-stimulated scaffold protein A homolog
KO
K23720
UV-stimulated scaffold protein A
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
109822418
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aof03400
]
109822418
DNA repair and recombination proteins [BR:
aof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
109822418
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Gene cluster
GFIT
Motif
Pfam:
DUF2043
UVSSA_N
Peptidase_C58
VPS38
Motif
Other DBs
NCBI-GeneID:
109822418
NCBI-ProteinID:
XP_020244200
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All DBs
Position
8:82050606..82053153
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AA seq
672 aa
AA seq
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MRGCVPKYDDEDVLAECWNRIRKSNSDQSNQKNKRKEREKRGSMSEMGGESTAIIPGLIE
KAASSTSQEVDPRLLKSIKSAARYSARETRLAALNHHEPLLRRPHSQVRLLSLLVADELF
MRSKLFRSLLVPDLDLFLTLTVGFRRNLPLPPPSSVASALRAKSVEILEKWTAEFGAHYR
QLRLGXXXXXXXQLRRRERELRSQQILMGKFEDLRTNYSSIRSEIQSTIDEINQCLEIID
VRDDDDGDVCTDGGEEKEEEFVSMELREIRSRSLKEGRRVRENSENWPVFDAIRELYKLL
VSRHLVSVQDWISVLVRVDVNDDKRFRDVALKEFIDFRILIRSVKKKCDELGCVLDEKPV
SRGGEEEEEDLWEEGKIEAYSVENANKEKGKGKNVDTGSCSTSKNNSESHSSSTSLRSKL
IAEAPVVDWSLSLDDWGSNRDALANQRGLELDSHWGRVDPDAVIPAEKIAELRLHCTVYK
EETTEIQPCLAPLRKGGLCQRRDMRICPFHGPIVPRDAKGNPIEQKREETPRESEREGSV
EATDEFLDLGDVETFSSEKLAKQAVKNVRERDREAVNAMKRAKLAKIREHNEAVLRESAI
ASTSYSENFGENQDPSSVQAKKPTLASMLKKKVTTKDRLAKRLLNTRARDSSSRQVTQGE
DSKYREAFPNQW
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgagaggctgcgtaccaaagtacgacgacgaagacgttttggccgaatgctggaaccgg
atacgtaaaagcaacagcgatcaatcaaaccaaaaaaacaaaagaaaagaaagagagaag
aggggatcgatgtcagagatgggaggagaatccaccgccatcatccctggcctaatcgag
aaagccgccagctcgacatcccaagaagtcgaccctcgcctcctcaagtccatcaaatcc
gccgcccgctactccgcgcgcgagacgcgcctcgccgccctcaaccatcatgaacccctc
ctccggcgaccccactcgcaggtccgcctcctctccctcctcgtcgccgacgagctcttc
atgcgctccaagctcttccgctccctcctcgtccccgacctcgacctcttcctaacccta
accgtcggattccgccgaaacctccccctcccccctccctcctccgtcgcctccgccctt
cgcgccaagtccgtcgagatcctcgagaagtggaccgctgagttcggggctcactaccgc
cagctcaggctagggtnnnnnnnnnnnnnnnggnagcagctgaggcggcgggagcgggag
ctgagatcgcagcagatcttgatgggtaagttcgaggacctgagaaccaattactcctcc
attagatccgaaattcagtccacgatcgatgaaatcaatcagtgtttagagattatcgat
gtcagagatgatgatgatggtgatgtttgcactgatggaggagaggagaaggaggaggag
tttgtttcgatggaactgcgtgagattagatcgaggtcgctgaaggaggggaggagagtg
agggagaatagcgagaattggccggtttttgatgcgattagggagctttataagcttctt
gtttcgaggcatctggtgagcgtgcaggattggatatctgtgcttgtcagagttgatgtg
aatgatgataaaaggtttagggacgtcgcgttgaaggagtttattgattttaggattctt
attcgatcggttaagaagaagtgtgatgagttagggtgtgttttagatgagaaaccagtt
tcgagagggggggaggaggaggaggaggatttgtgggaggagggcaaaatcgaagcttat
tctgtggaaaatgcaaataaagagaaaggaaaggggaagaatgtggacactggttcttgt
tccacgtccaagaataatagcgagtcccactcaagttcgacgtcactgagatcgaagctt
attgctgaagctccggttgtggattggagtttgtccttggatgactggggttcgaaccga
gatgctttggctaatcagaggggattagaactcgatagccattggggtagagtggatcct
gatgctgtcattcctgcagaaaagatcgcggagcttagactacactgtacggtgtataaa
gaagagaccaccgagatccaaccttgccttgctcctctgagaaaaggcgggctatgccag
aggagagatatgaggatttgcccttttcatgggcctattgttcctcgagatgctaagggg
aacccgatagaacaaaagagggaggagactccaagagaatctgaaagagagggctccgtt
gaggcaactgatgaatttcttgatttgggtgatgtggagactttttcttctgagaaattg
gctaaacaagcagtgaagaatgtgagggaaagggatagagaggctgttaatgcaatgaag
cgagctaaacttgcaaaaattcgagagcacaatgaagcagtgttacgagaatctgctatt
gcttcgacttcatactctgagaattttggagagaatcaagacccatcatcagttcaggcc
aagaaaccgacactggcatccatgttgaaaaagaaagttacaacaaaggacaggttagca
aagaggcttttgaatacgcgtgcaagggattcttcaagcaggcaagttacacaaggggag
gattcaaagtatagagaagcttttccaaaccaatggtag
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