Asparagus officinalis (garden asparagus): 109823232
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Entry
109823232 CDS
T05243
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03030
DNA replication
aof03410
Base excision repair
aof03420
Nucleotide excision repair
aof03430
Mismatch repair
aof03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
109823232
03410 Base excision repair
109823232
03420 Nucleotide excision repair
109823232
03430 Mismatch repair
109823232
03440 Homologous recombination
109823232
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aof03032
]
109823232
03400 DNA repair and recombination proteins [BR:
aof03400
]
109823232
Enzymes [BR:
aof01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
109823232
DNA replication proteins [BR:
aof03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
109823232
DNA repair and recombination proteins [BR:
aof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
109823232
MMR (mismatch excision repair)
DNA polymerase delta complex
109823232
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
POL3_N
REV3_N
DNA_pol_B_2
divDNApol
Motif
Other DBs
NCBI-GeneID:
109823232
NCBI-ProteinID:
XP_020245108
LinkDB
All DBs
Position
9:15540258..15586422
Genome browser
AA seq
1086 aa
AA seq
DB search
MSGNNSQFARLRRRCSAACRTLSKAHYSKQRRRPVNVSQSPNTIEDEMMDEDVYLEETLI
KYEEDEEALILLGDEAVASRLSKWKRPSLPPQQFSQNIVFQQLEIDYIIGDSNKELLPNS
SGPAAILRIFGVTKEGHSVCCHVHGFEPYFYFSCPAEMGPDAISRFQQTLEGRMRESNRN
SNVLRFIRRIELVQKKSIMYYQQCQSQPFLKIVVALPTMVASCRGILERGIQIEGLGLKS
FMTYESNILFALRFMIDCNIVGGNWIEVPAGKYKKTARSMSYCQIELECLYSDLVSHVPE
GEYSKMAPFRILSFDIECAGRKGLFPEPTHDPVIQIANLVTLQGEDCPLIRNVMTLKSCS
PIVGVDVMSFDTEKKVLLAWRDFIQKVDPDIIIGYNICKFDLPYLMERAEALKIAEFPIL
GRVRNSRVRMRDTTFSSRQYGVRESKEVTIEGRVQFDLLQAMQRDYKLSSYSLNSVSAHF
LSEQKEDVHHSIISDLQNGSPETRRRLAVYCLKDAYLPQRLLDKLMYIYNYVEMARSIKV
LSQLLRKARQKNLVIPNFKGQVSGQDTFEGATVLEAKAGFYEKPIATLDFASLYPSIMMA
YNLCYCTLVTPVNARELNLPADSVNKTPSGELFVKSDLQKGILPEILEELLAARKRAKAD
LKEAKDPLEKAVLDGRQLALKISANSVYGFTGASIGQLPCLEISSSVTSYGRQMIEHTKK
LVEERFTTTGGYDHNAEVVYGDTDSVMVQFGVPSVEAAMKLGREAADYISRTFTKPIKLE
FEKVYYPYLLISKKRYAGLYWTNPDKFDKMDTKGIETVRRDNCLLVKNLVTECLNKLLID
RDVPGAVQYVKNTISDLLMNRMDLSLLVITKGLTKTGDDYAVKAAHVELAERMRKRDAAT
APNVGDRVPYVIIKAAKGAKAYEKSEDPIYVLENNIPIDPQYYLENQISKPLLRIFEPIL
KNASKELLQGSHTRAMSISTPSTGGLMKFAKKQLGCLGCKALLSNADQTLCKHCKGREAE
LYSKTVANVRELEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKTQ
LDRWNF
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atgagcggaaacaacagccaattcgcgcggctgcgccgccgctgttccgcggcgtgccga
accctctcgaaagcgcattacagcaagcaacgccggcggccagttaacgtcagccaaagc
cctaacaccatcgaggacgagatgatggacgaggacgtgtatttagaagaaaccctaatc
aagtacgaagaagacgaggaggccttgattctccttggagatgaagccgtagcttctcgg
ctctccaaatggaagcgcccttctctccctcctcagcaattctctcaaaacatagttttt
cagcaactggagatcgattacattattggtgatagcaacaaggagttgcttccaaattct
tcgggtcccgccgcgattctcaggatctttggcgtgactaaagaagggcacagtgtctgt
tgccatgttcatggattcgagccctatttctattttagctgtcctgcagagatgggacca
gatgctatatcaagattccagcaaactctagagggtagaatgagggaatccaacaggaat
agtaatgtgctgaggttcatcaggcggatcgagttggttcagaagaagagcattatgtat
taccagcagtgtcagtcgcaaccatttcttaagattgttgtggccttgcctacaatggtt
gctagttgtcgaggcattctggaaagaggcatacagattgaaggccttggtttaaagagt
ttcatgacatatgaaagcaatattcttttcgcacttcgtttcatgattgattgcaacatt
gttggtggtaattggattgaagtccctgcagggaagtataagaagacagccaggagtatg
tcctattgccaaattgaactagagtgtctgtattctgacttggtcagtcatgtcccagaa
ggagagtactctaaaatggctccatttcgcatattaagttttgatattgagtgtgctggt
cgtaaaggacttttccctgagcctactcatgatcctgttattcagatagccaacttagtc
actctacaaggagaggattgtcctctcatccgcaatgtgatgactcttaaatcatgctct
ccaattgttggcgttgatgtgatgtcatttgacacagaaaaaaaagttttgcttgcttgg
agggatttcattcaaaaggtagatccggatattattattggatacaatatctgcaaattt
gatcttccatatctcatggagagagctgaagccctcaagatagcggaatttcctatcctg
ggtcgtgttagaaacagtcgggttcgcatgcgtgatacaacattctcctcaaggcagtat
ggagtgcgggaaagcaaagaagtgacaatcgagggaagggtccaatttgatctgcttcag
gctatgcaaagggattacaagcttagttcatattctttgaattctgtctctgcacacttc
ctctcagagcaaaaagaggacgtacaccattccataatatctgatcttcaaaatggaagt
cctgagacaagacgacgcctcgctgtgtactgcttgaaggatgcttatcttccacaacgg
cttttagacaagttaatgtacatttacaattatgtagagatggctcgaagcattaaggtc
ctttctcaacttcttaggaaagcgagacaaaagaatcttgtcattcctaattttaaaggg
caggtatctgggcaagacacttttgagggagcaacggttttggaggcaaaggctggattt
tatgaaaagcctattgcaactttggacttcgcatctttatatccgtccataatgatggca
tacaatctgtgctattgcacattggtgacaccggttaatgctcgggaattgaacttgcca
gccgatagtgtcaacaaaactccgtctggggaactttttgttaaatcagacttacagaag
ggtatactaccagaaattcttgaggaattgttagctgctcgtaaaagggcgaaagcagat
ctaaaggaggcaaaagatccacttgagaaggctgtgttggatggtcgccaactcgctttg
aagataagtgcaaactctgtttatggtttcactggagcttcaattggccaattaccttgc
ttagagatatcatcgagcgttacaagctatggtcgacagatgattgagcatacaaagaaa
ctcgtggaagagagatttacgacaactggtggctacgatcataatgcagaggttgtttat
ggagacactgattctgtcatggtacaattcggtgtgccaagtgtagaagctgcaatgaaa
ctgggaagggaggcagccgattatatcagcagaactttcacgaagcccatcaaactagag
ttcgagaaggtttattatccatatctattaattagcaagaaaagatatgctggattgtat
tggacaaatcctgataagttcgacaaaatggatactaaaggcattgaaacagtcagaaga
gacaactgtttgttagtaaaaaatctggtgactgaatgccttaacaaattattaattgac
cgagatgttcctggtgctgttcaatatgttaagaacaccatatctgatcttctgatgaac
cgcatggacttgtctcttttggttataacaaagggtttgacaaaaacaggtgatgattat
gctgtgaaggctgcacatgttgaacttgctgagcgaatgagaaagcgtgatgctgcaact
gcccccaatgttggagaccgtgttccatatgtcataattaaagctgcaaaaggtgccaag
gcttatgagaagtcggaggatcccatatatgtgcttgagaacaacattcctattgacccc
cagtactaccttgagaaccagatcagcaagccattattgagaatatttgaacctattctg
aaaaatgcaagtaaagaactccttcaaggaagtcacaccagggctatgtcaatttctact
ccttcaaccggcggtttaatgaaattcgcaaagaaacagcttggctgccttggatgcaaa
gcgctacttagcaatgcagatcaaacactttgcaaacactgcaaaggaagagaagcggag
ttgtattccaagacagtagctaatgttcgtgagctggagatgctttttgggaggctatgg
acgcagtgtcaagaatgccaaggctcgctccaccaagatgttttgtgcacaagtcgggat
tgccccattttctatcggcggaagaaagcacaaaaggacatggctgaagctaagacgcaa
cttgaccggtggaacttttga
DBGET
integrated database retrieval system
