KEGG   Asparagus officinalis (garden asparagus): 109823394
Entry
109823394         CDS       T05243                                 
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1-like
  KO
K10601  E3 ubiquitin-protein ligase synoviolin [EC:2.3.2.27]
Organism
aof  Asparagus officinalis (garden asparagus)
Pathway
aof04120  Ubiquitin mediated proteolysis
aof04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:aof00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    109823394
   04120 Ubiquitin mediated proteolysis
    109823394
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:aof04121]
    109823394
Enzymes [BR:aof01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     109823394
Ubiquitin system [BR:aof04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    109823394
SSDB
Motif
Pfam: zf-RING_2 zf-rbx1 zf-C3HC4 zf-C3HC4_2 zf-RING_UBOX zf-C3HC4_3 zf-ANAPC11 Integrase_2 zf-HC5HC2H zf-RING_5 zf-RING_16 MIX23 zf-RING_11 zf-RING-like zf-C3HC4_4
Other DBs
NCBI-GeneID: 109823394
NCBI-ProteinID: XP_020245259
LinkDB
Position
9:complement(41944753..41948138)
AA seq 244 aa
MVSCIRKENNVRSMAIVMLTMLEIMTLEDNPVFHARTKHIEVHHHFLREKVLQEEIVMKP
IGTNEQIADIFTKALSTSKFSEFRSQLGLMDRKVSAEGEHYGLPLHLIRELYETFRSFRI
RIADYIRYRKVTSNVDERFPSATPEEINASDATCIICREEMLTAKKLHCGHLFHVHCLRS
WLERQNICPTCRALVIPPENGSAASGQQATTPAPAIGNPDPKISMLKAREAFIQTQIEEP
AEHY
NT seq 735 nt   +upstreamnt  +downstreamnt
atggtctcatgtataagaaaggagaataatgtgcggtctatggctattgtgatgctgact
atgctggagatcatgacactcgaagataatccagttttccatgctaggacaaagcatata
gaagtacatcatcactttcttcgagagaaagttcttcaggaggagattgttatgaagcca
atcgggacaaatgaacaaatagctgacatattcaccaaagcactaagtacttcaaagttt
tcagaatttcgaagtcagcttggactcatggatagaaaagtctctgctgagggggagcac
tatggtttgccgctgcacttgatccgagaactctatgagacatttcgcagcttcagaatc
cgcattgcggattacattcgttaccggaaggttacatcaaatgtggatgaacggttcccg
agtgcaacacctgaggagattaatgcaagtgatgcaacgtgcattatttgccgtgaagag
atgttaacagccaaaaagttgcattgtgggcacctttttcatgtgcattgtttgcgatca
tggttagaacgacagaatatttgcccaacttgcagagctttagttattcctcctgaaaat
ggatcagctgcatctggacagcaagccactactccagctcctgctataggcaatccagac
cctaaaatttccatgttgaaagcacgcgaggcttttatccagacccagattgaggagcct
gcagaacattattga

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