Asparagus officinalis (garden asparagus): 109823394
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Entry
109823394 CDS
T05243
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1-like
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof04120
Ubiquitin mediated proteolysis
aof04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
109823394
04120 Ubiquitin mediated proteolysis
109823394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
aof04121
]
109823394
Enzymes [BR:
aof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109823394
Ubiquitin system [BR:
aof04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
109823394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-ANAPC11
Integrase_2
zf-HC5HC2H
zf-RING_5
zf-RING_16
MIX23
zf-RING_11
zf-RING-like
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
109823394
NCBI-ProteinID:
XP_020245259
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Position
9:complement(41944753..41948138)
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AA seq
244 aa
AA seq
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MVSCIRKENNVRSMAIVMLTMLEIMTLEDNPVFHARTKHIEVHHHFLREKVLQEEIVMKP
IGTNEQIADIFTKALSTSKFSEFRSQLGLMDRKVSAEGEHYGLPLHLIRELYETFRSFRI
RIADYIRYRKVTSNVDERFPSATPEEINASDATCIICREEMLTAKKLHCGHLFHVHCLRS
WLERQNICPTCRALVIPPENGSAASGQQATTPAPAIGNPDPKISMLKAREAFIQTQIEEP
AEHY
NT seq
735 nt
NT seq
+upstream
nt +downstream
nt
atggtctcatgtataagaaaggagaataatgtgcggtctatggctattgtgatgctgact
atgctggagatcatgacactcgaagataatccagttttccatgctaggacaaagcatata
gaagtacatcatcactttcttcgagagaaagttcttcaggaggagattgttatgaagcca
atcgggacaaatgaacaaatagctgacatattcaccaaagcactaagtacttcaaagttt
tcagaatttcgaagtcagcttggactcatggatagaaaagtctctgctgagggggagcac
tatggtttgccgctgcacttgatccgagaactctatgagacatttcgcagcttcagaatc
cgcattgcggattacattcgttaccggaaggttacatcaaatgtggatgaacggttcccg
agtgcaacacctgaggagattaatgcaagtgatgcaacgtgcattatttgccgtgaagag
atgttaacagccaaaaagttgcattgtgggcacctttttcatgtgcattgtttgcgatca
tggttagaacgacagaatatttgcccaacttgcagagctttagttattcctcctgaaaat
ggatcagctgcatctggacagcaagccactactccagctcctgctataggcaatccagac
cctaaaatttccatgttgaaagcacgcgaggcttttatccagacccagattgaggagcct
gcagaacattattga
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