Asparagus officinalis (garden asparagus): 109823626
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Entry
109823626 CDS
T05243
Name
(RefSeq) DNA excision repair protein CSB
KO
K10841
DNA excision repair protein ERCC-6
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
109823626
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
aof03036
]
109823626
03400 DNA repair and recombination proteins [BR:
aof03400
]
109823626
Chromosome and associated proteins [BR:
aof03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
109823626
DNA repair and recombination proteins [BR:
aof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
109823626
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
WHD_Rad26_CSB
ResIII
HDA2-3
WHD_SOWAH
AAA_30
Motif
Other DBs
NCBI-GeneID:
109823626
NCBI-ProteinID:
XP_020245498
LinkDB
All DBs
Position
9:62178925..62188940
Genome browser
AA seq
1214 aa
AA seq
DB search
MDDEDEDNVLLGSLGITSVKPEDIERKILSEVKTDAGCESEYVENSEYNSLDGEHGTDTS
STSQINLFNKLRAVEVEINAVASTIEKGKAVAEKENENSGIADIKEDKNVRNKDSVQVNP
DGFTLQQALATDRLKSLKKTKVQLEKEISKVNKHAPINGSGDEVLLDLVKEKPKHKQRLK
PVDKDNKDSKRRLKTVSYNEDADFDAVLDAASAGFVETERDELVRKGILTPFHKLKXXXX
PSNRHHASDEGATGNLASSSISRLAQSMSEIAQARPTTKLLDPEALPELDPPTRPFQKLK
TPIKLPVSPSAEKSEKKKRKLRKTKRPLPDKKWRKDYSTEKLLDASDGNATRDPTASDYD
EEKEEEEDNGDDIEQSPVILEGGLRIPDSIYSQLFDYQKVGVQWLWELHCQRAGGIIGDE
MGLGKTIQVISFLGALHFSKLYKPSIVICPVTLLRQWQREAKKWYPAFNIEILHDSAHGA
QNQTLKRSSESDYDSEASLSSDNDKPRPSKPNWNELIDQVLRSESGLLLTTYEQLRLHGD
KLLDIEWGYAILDEGHRIRNPNADVTLVCKQLQTVHRIIMTGAPIQNKLAELWSLFDFVF
PGKLGVLPVFETEFAVPITVGGYANATPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQ
LPKKTEHVLFCSLTSDQRSVYRAFLASSEVEQIFDGSRNSLYGIDIMRKICNHPDLLERE
YSAQNPDYGNLERSGKMKVVAQVLRVWKEQGHRVLLFAQTQQMLDILENFLGSSGYSYRR
MDGLTPVKQRMALIDEFNNSSEVFVFILTTKVGGLGTNLTGANRVIIYDPDWNPSTDMQA
RERAWRIGQQRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKAKDMRDL
FTLKDDTDVGSTETSSIFGQLSEEINLGVGKCNDSQDKQGSSSVTCEPVRIEQTHSLKSK
CSGSTSNGEECGDQKNCEIDEEANILKNLFDAQGIHSAVNHDAIMNANDDDKLRMEEQAS
RVARRAAEALRESRMLRSKESFAVPTWTGRSGAAGAPSSIHRKFGTTVNTKLTASSPNRS
NGLSIGPSTGKALSSAELLSRIRGTQERAIDDALEQDLDLASSSRERKGCIQETHRTSRS
SNKIAVAQPEVLIRQLCTFIQQRGGRADSASITQHFKDRIQSKDLPLFKNLLKEIATLER
GAEGTRWVLKPEYR
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atggatgacgaggacgaggataatgttttgttgggcagtttgggtattacatccgtgaaa
ccagaagatattgagcgcaaaatactttcagaggtgaaaactgatgctggatgtgagagc
gaatatgtggagaactcagaatacaacagccttgatggagaacacggaaccgatacatca
tctactagccaaatcaatctcttcaacaagttgcgagctgttgaagttgaaatcaatgct
gttgcttctaccatcgaaaagggtaaagctgttgcagaaaaggagaatgaaaattcaggc
attgcagatatcaaggaagataaaaatgtgagaaataaggattctgttcaagttaatcct
gatggatttactcttcagcaagcactagccactgatcgtttaaagagccttaagaaaaca
aaagtacagcttgaaaaagaaatttctaaagtcaacaagcatgctccaattaatggaagt
ggagatgaggttcttcttgatttagttaaggaaaagccaaaacataagcagaggctaaaa
ccagtggataaggacaacaaggattctaaacgtcgtctaaaaacagtatcctataatgaa
gatgccgattttgatgcggtgctggatgcagcttctgctggctttgtagaaactgaaaga
gatgagttggtacgaaagggaatattaaccccatttcataaacttaaannnnnnnnnnag
ccatcaaacaggcaccatgcttccgacgaaggcgcaactggaaaccttgcttcatccagc
atttcgagactagctcaatctatgtcagagattgcacaggctcgaccaacaacaaagtta
ctagatcctgaggcattacctgaacttgatccacctactcgaccttttcaaaaacttaag
acacctataaaacttccagtgtctccaagtgcagagaaatcagagaagaaaaagcgtaag
cttagaaagacaaagaggcctttaccagataagaaatggagaaaagattattctactgaa
aaactcttggatgcaagtgatggaaatgcaaccagagacccaactgcctctgattatgat
gaagaaaaagaagaggaagaggacaacggagatgacattgagcaatctccagtaatcctt
gaaggaggattgagaattcctgactcaatttattcacagctttttgattatcaaaaagtg
ggagtacagtggttgtgggaactacactgccaaagagctggcggtataattggagatgaa
atgggtctgggtaaaactattcaggtgatatcttttctcggtgctctccatttcagcaag
ttgtataaacccagcatcgtcatttgtcctgtcactcttcttcgtcaatggcaaagggaa
gccaaaaaatggtaccctgctttcaacatcgagatacttcatgattctgcccatggtgca
caaaaccaaacacttaaaagatccagtgaaagtgactatgatagtgaagcttcactcagt
agtgataatgataaacctcgaccatccaagccaaattggaatgaattgatcgatcaagtg
ctgagatcagagtcagggcttctccttaccacttacgaacaacttcgccttcacggggat
aaattgcttgatatagaatggggctatgctattttagacgagggccatcgtataagaaat
cctaatgctgatgtcactctcgtttgcaaacaactacaaactgtgcatcggataattatg
actggtgcaccgatccagaacaaacttgcagaactttggtcgctctttgatttcgtcttt
ccgggcaaacttggggttttgcctgtttttgagactgagtttgcagttcccataacggtc
ggtggttatgccaatgccacaccgttgcaagtttccacagcttaccggtgtgcagtagtg
ttaagagatttaatcatgccttaccttcttcggagaatgaaagctgatgtgaatgctcaa
cttccaaagaaaacagagcatgttcttttctgtagcttgacttctgatcagaggtctgtt
tatcgagcttttcttgctagctctgaagtggagcagatctttgatgggagtaggaactca
ctttatgggatcgatatcatgagaaaaatctgcaatcatcctgatcttttggaaagagaa
tactcagcccaaaatcccgattatggaaatctagagaggagtggaaaaatgaaagttgtt
gcgcaagtacttagggtctggaaggaacaagggcatcgggttctgctctttgcacagact
caacaaatgcttgacattcttgagaactttcttggttcgagtgggtatagttaccggaga
atggatggacttactcctgtgaagcaaaggatggcactcattgatgaatttaataattca
agtgaagtttttgttttcatcttgacgactaaggttggcggtttgggcactaacttgact
ggcgctaaccgggttattatatatgatcctgactggaatccttctactgacatgcaggca
agagagcgagcttggaggattgggcagcaacgggatgtaacggtgtatagacttatcaca
cgcgggactatagaggagaaggtgtaccacaggcagatatacaagcatttcttaaccaac
aagatcttgaagaaccctcagcagaggagattcttcaaagccaaggacatgagagatctt
ttcactttaaaagatgacaccgatgttggctctactgagacatcaagtatctttggccag
ctgtctgaagagataaatcttggggttggcaaatgcaatgatagccaagataaacaaggc
tcctcatcagtaacttgtgagcctgttagaatagagcaaacacattcactaaaaagtaaa
tgctcaggttcaactagtaatggagaagaatgtggcgaccagaagaattgtgagattgat
gaagaagcaaacattttgaagaatttgtttgatgcccaagggatccatagtgcagtaaat
cacgacgcgatcatgaatgccaacgacgacgataagttgcgaatggaggagcaagcgtcc
cgagttgcacgaagagcagctgaagctctccgtgagtctcgaatgctccgaagtaaagaa
agcttcgccgtcccaacatggacgggacgatccggtgcagccggagctccatcctctatc
catcgaaagttcggtacaactgtaaataccaaactaacagcttcctctcccaacaggtcc
aatgggctttctattgggccttcaacggggaaggctctatcttctgctgaactcttgtca
agaattcggggaacacaagagagagcgatcgatgatgctttagaacaggatttggatttg
gcgtcaagttcgagggagagaaaaggatgtatacaagaaactcatcggacatcgagaagt
tcaaataagatcgcggttgctcagcctgaagtgttgatacggcagttgtgtacttttata
cagcagaggggcgggcgtgctgattctgcaagtataacacaacattttaaggataggata
cagtcaaaagatttgccccttttcaagaatttgttgaaggaaatagcgacgttggagagg
ggggctgaggggacgaggtgggtgttgaagcctgagtatcggtag
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integrated database retrieval system
