Asparagus officinalis (garden asparagus): 109823652
Help
Entry
109823652 CDS
T05243
Name
(RefSeq) DNA repair helicase XPB1-like
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03022
Basal transcription factors
aof03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109823652
09124 Replication and repair
03420 Nucleotide excision repair
109823652
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aof03021
]
109823652
03400 DNA repair and recombination proteins [BR:
aof03400
]
109823652
Enzymes [BR:
aof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
109823652
Transcription machinery [BR:
aof03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
109823652
DNA repair and recombination proteins [BR:
aof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
109823652
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
DEAD
Motif
Other DBs
NCBI-GeneID:
109823652
NCBI-ProteinID:
XP_020245551
LinkDB
All DBs
Position
9:1252055..1278615
Genome browser
AA seq
639 aa
AA seq
DB search
MHEYNLTPHSLYAVVSVGLETETIINVLNKLSKTKLPKEMIDFIHASTANYGKVKLVLKK
NRYFVESPFPEVLKTLLRDDVISRARICFEGHHEGGSFTISKTAGEIEGGHDELLNGVDL
AAAAEEKETHSFEIDPAQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLNIELKPQAQP
RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF
QFQLWSNIKEEHICRFTSDNKERFRGNAGVVVTTYNMVAFGGKRSEDSEKIIEEIRNREW
GLLLMDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLVGPKLYEANWLD
LVKGGFIANVQCAEVWCPMTKEFFAEYLKRENSKKKQALYVMNPNKFRACEFLIRFHEQQ
RGDKIIVFADNLFALTAYAMKLRKPMIYGATSHAERTRILKAFKCSPDVNTIFLSKVGDN
SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGRLQDRMAGGKEEYNAFFYSLVSTDT
QEMYYSTKRQQFLIDQGYSFKVLSAGDDVVGLEQLEEDADDIALQKARRSAGSMSALSGA
SGMVYMEYNTGQGKKGHGKSKPKDPAKRHHLFRKRYSQA
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgcatgagtacaacctaacacctcattctctctatgctgttgtgtcggttgggcttgag
accgagacaatcataaatgtcttaaacaagctatcaaagactaagttgcctaaggagatg
atagatttcatccatgcttccaccgccaattatgggaaagtgaaactcgtgttgaagaag
aatcgatactttgtggagtcaccttttccggaggtgctgaagacattgcttagggatgat
gtcatatctcgtgcgaggatttgttttgagggtcatcatgaaggtggttcatttacaatt
agcaaaacggctggagaaatagaaggtggccatgatgagttgctgaatggtgtagactta
gctgctgctgctgaagagaaagaaacacattcctttgaaattgatcctgcccaggttgag
aacgtgaagcaaagatgtttgcctaacgccttaaattatcctatgctggaggagtatgat
tttagaaatgatacggtgaacccagacttgaacatagaattgaagccgcaagcacaacct
agaccatatcaagaaaagagtctcagcaagatgtttgggaatggaagagcaaggtctggc
attattgttttgccttgtggtgctggaaagtctttggttggtgtctctgcggcatgtcga
attaagaagagctgtctttgcttagctaccaacgcggtctctgtggatcaatgggctttc
cagtttcagctttggtctaatataaaggaagaacatatttgtcggtttacatctgataac
aaagaaagatttcgtggcaatgctggtgtggttgtcaccacttacaacatggttgcattt
ggtggaaaaaggtctgaagattctgagaaaatcattgaagaaataagaaatagagaatgg
ggtttgcttcttatggacgaggtgcatgttgttcctgcacacatgttccggaaggtcatt
agcattactaagtctcattgcaagcttggacttactgcaacgctagtgagagaggacgaa
cgtatcacagatctcaactttcttgtaggaccaaaattgtatgaagctaattggttggat
ttggtaaaaggagggttcatagctaacgttcagtgtgctgaagtgtggtgccccatgacg
aaggaattctttgcagagtatttgaaaagggaaaattctaaaaagaagcaggcactttac
gtgatgaatccaaacaaattcagagcctgtgaatttctgattcgctttcatgagcaacaa
cgtggtgataagattattgtgtttgctgataatctttttgccctcaccgcatatgcaatg
aagctaaggaaacctatgatatatggtgcaaccagccacgctgagaggacaagaattctt
aaagcattcaaatgtagcccggatgttaatacaattttcttatctaaggtgggtgacaat
tcgatagatattcctgaagctaacgtgataatacaaatatcatctcatgctggttcaaga
cgtcaagaagcacaacggctgggccgtattcttagggcaaagggtcggctccaagacaga
atggccggtggaaaagaagagtacaatgcctttttctattctctagtatctacagataca
caggagatgtattactctaccaaaaggcagcaatttctgattgaccaaggctacagcttt
aaggtattgagtgctggagatgatgtggttggcttggagcagttagaagaagatgctgat
gacattgctctacagaaggcccgacgttctgcgggatcaatgagcgctctatcaggagct
agcgggatggtgtacatggagtacaatactggccaaggcaagaagggccatggcaagagt
aaaccaaaggacccggcaaagagacaccatttgtttaggaagcgctatagccaagcctag
DBGET
integrated database retrieval system
