Asparagus officinalis (garden asparagus): 109823726
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Entry
109823726 CDS
T05243
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109823726
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109823726
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109823726
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109823726
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
YlxR
Motif
Other DBs
NCBI-GeneID:
109823726
NCBI-ProteinID:
XP_020245669
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Position
9:complement(3571297..3579878)
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AA seq
616 aa
AA seq
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MGGVPSSGMQQPGGGISSGRFGSNNLPVAMSQLSHGSAHGHSGITNRGGINVLGNTAFSS
SMNGVGGSLPGISSNSVTAGNRNSVPGLGASPVLGGPRITNSMGSIVGGGNIGRSISSGG
LSVPGLASRVNLATNSGSGSLNLQGPNRLMGGMLQQAPQMLNMLGNTYPTSGGPLSQNQV
QTGNSALSSMGMLSDVNSNDNSPFDINDFPQLSGRPSSAGGSQGQLGSLRKQGVGVSSIV
QQSQEFSIQNEDFPALPGFKGGSSDFSMDLHQKEQLHDNVSMMQSQHFPMARSAGFSLGG
TYPSGRQQQQHGTSVNNAGVSFTPGSNQDLMHLHGSDLFPSSHGSYHSQIQNTGHPSIGL
RQLNSTNPASGMGAYEQLMQYQHPQSQSQFRLQQMSAVNQSYRDQSLKSMQASQAAPDRF
GLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSTDNLYKTFGSPWSDEPAKGEPEYSIP
SCYYAKQPPPLQQGHFARFQLSTLFYIFYSMPRDEAQLFAAHELYNRHWFYHKENQLWFS
RIPNVEPLVKTQQYERGAYLCFDPNTWETVRKNKTLPPSHPHLPKKRKHTDTYEGLKENF
VLHYDAVEKKPVIPQH
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgggtggagttccgtcgagcggtatgcagcagccgggcggaggcatttcgagcgggcgg
tttggttcgaataatttgcccgttgctatgtcgcagctatcacatggaagtgcacatgga
cattctgggatcaccaacagagggggtattaatgtcttaggaaacactgcttttagtagc
agcatgaatggtgttgggggttcattacctgggatttcatcaaactctgttactgctggc
aaccgcaactctgttcctggtttgggagcatctcctgttttaggaggacctagaataaca
aactcaatgggtagcattgttggtggagggaacattgggagaagtattagctctggagga
ctatctgtacctggccttgcatcacgtgtaaatttggccactaacagtgggtcaggaagt
cttaatctacagggacctaacaggttgatgggtggcatgcttcagcaagcacctcaaatg
cttaatatgctcggaaatacttatcctacatctggaggacctttatctcaaaatcaagta
caaacaggaaatagcgcattaagttctatggggatgctgagtgatgtcaattccaatgat
aattctccttttgacattaatgattttcctcagttatctgggcgaccaagttctgctgga
ggatcacaaggacaactaggttcattacgtaagcaaggagttggggtaagctcgattgtc
cagcaaagccaagaatttagcattcaaaatgaagattttcctgctttacctggattcaaa
ggtggcagttcagatttttctatggatttgcatcaaaaggaacagcttcatgataatgtt
tctatgatgcagtcacaacacttccctatggctagatcagcaggtttcagcttgggcggg
acttacccatctggtcgtcagcaacagcaacatggcacctcagttaacaatgctggggtt
agtttcacacctggaagcaatcaagatcttatgcatctacatggttctgatctctttcca
tcttcccatggaagctatcattctcagattcaaaacactgggcatcctagtatcggattg
agacagttgaactctacgaatcctgcctctggtatgggtgcatatgagcagctaatgcag
taccagcacccgcaaagccagtcacaatttcgtcttcaacagatgtctgcagtcaatcaa
tcatatagggatcagagtttgaagtctatgcaggcatcacaagcagctcccgatcggttt
ggtttgttgggattgttaagtgttatcaggatgagtgatccggatttgacgtctcttgca
ttgggaatagacttaacaaccctagggttgaacttaaactcaacagataatctttacaag
acatttggttcaccttggtctgacgagcctgcgaaaggagagcctgagtatagtattccg
tcctgttattatgccaaacaaccacctccactacaacaagggcattttgcgagattccag
ctttcaactctgttttacatcttctacagcatgccgagggatgaagctcaattgtttgct
gcacatgaactatataacagacactggttttaccacaaagagaaccagttatggttttca
agaatcccaaatgttgagccccttgtcaagacccaacaatacgagagaggggcatatcta
tgttttgatccaaacacttgggaaacggttcgaaagaataagaccctgcccccgtctcac
ccccacctacccaagaaaagaaaacacacagacacttacgaggggttgaaggaaaatttt
gtgttgcattatgacgcagtggagaagaaacctgtaatacctcagcattag
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