KEGG   Asparagus officinalis (garden asparagus): 109823749
Entry
109823749         CDS       T05243                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A isoform X1
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
aof  Asparagus officinalis (garden asparagus)
Pathway
aof03030  DNA replication
aof03410  Base excision repair
aof03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:aof00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    109823749
   03410 Base excision repair
    109823749
   03420 Nucleotide excision repair
    109823749
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:aof03032]
    109823749
   03400 DNA repair and recombination proteins [BR:aof03400]
    109823749
Enzymes [BR:aof01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     109823749
DNA replication proteins [BR:aof03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    109823749
DNA repair and recombination proteins [BR:aof03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      109823749
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 DNA_pol_B zf_DPOE_2 zf-DPOE DNA_pol_B_exo2 RNase_H_2 DUF3545 LIN37
Other DBs
NCBI-GeneID: 109823749
NCBI-ProteinID: XP_020245703
LinkDB
Position
9:complement(482862..517939)
AA seq 2222 aa
MNGDRRRRDQFNSRRNQSKQKLRLNAEEVLEAKLGYDLFTEGEKKLGWLLTLAPSSWEDQ
ETNKIYSCVDLYFVSQDVSTFKIKYKFPPYFYAATKDKTHLEVEAYLRRRYEGQIADIEI
VDKEDLDLRNHLSGLRRTYLKISFDTVQQLMSVKSDLVHVVERNQAKMDAAEAFDNVYNN
NSKERLQDYIDYIFDLREYDVPYHVRFAIDNDIRCGQWYDVIVSGSSILLDKRTDLLQRA
EVHVCAFDIETTKLPLKFPDAEYDLIMMISYMIDGQGYLIINKECVGEDIEDLEYTPKPE
FEGYFKVTNAKNEEELLKLWFAHMQEVKPGIYVTYNGDFFDWPFLEKRAAHYGVKMSEEI
GFQCDDNQGECRAKFSCHLDCFAWVKRDSYLPQGSHGLKAVTKAKLGYDPLEVNPEDMVR
FAMEQPQTMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMPPDEVLRKGSGTLCEMLLM
VQAFRANVVCPNKHQEDPEKFYNNRLLESETYIGGHVECLESGVFRSDLPTKFQLDPSAY
EQLIGNLDRDLHYAIQVEGKMGLDSITNYEDVKKAIMDKLILLRDHPIREECPLIYHLDV
AAMYPNIILTNRLQPPSIVSDVVCTACDFNRPGKNCLRKLDWVWRGETYMAKRSDYYHIK
KQIESELVEYGGDQSSKPFIDLPKAEQKLKLKERLKKYCQKAYKRVLDKPITELREAGIC
MRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLADAKASGNPMKVQEAQDMVVLYDSLQLA
HKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGRPLELDTDGIWCA
LPGSFPENFTFKTKDAKRKLTISYPCVMLNVDVARNNTNDQYQTLQDPITKTYTTHSECS
IEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGSLAELKGFEIKRRGELKLIKVFQAE
VFDKFLHGSTLEECYAAVAAVANRWLDLLDNEGIDIADSELLDYISESSTMSKSLVEYGE
QKSCAVTTARRLADFLGDTMVKDKGLRCQYIVAREPQGTPVSERAIPVAIFETDTEIGKF
YLRKWCKISADAAIRSIIDWSYYKQRLXXXXSILYSKQMLLVSLNLILARYLQVSNPVPR
VLHPDWLHKKVREKDDRFRQRKLVDIFSTMSKDAGDPDCGDLEDFANKQSSSRSGPRPIV
RSFEINKENYFSRPACPVSEMPANNQQDNAAAIRFPHPLMPSHQNGSTTESIDRDTDYQG
WLQLKKRKWREIREERKRRRLGNRGKPSQAVGATKLPRSVSSCRRDQDKNGVSSFFRKHE
FSLIRSHWQIIQLVSSTHPGRFFAWVIADGIMNKISITVPRVFYLNSKAPVTEEFPGRRV
NKILPHSRPVFNLIEVCIDEDQFRAESRKLAIHLADPEVEGIYETKVPLEFNAILQIGCV
CKVDKTARVRNAQDGWNMSELQMKTTTECSYLEQGISFFYLYHSFLEGRGIYIAYIAVSS
TISAIVVNPFQNKELSSSLLEKQFREACQALSIDPPAHGSHITFKVDYVKSIEAGEKHLQ
RALTEFRGKNAGPTIGLIESPNFQSIKSAIRVLDDFPCVSIPCNARDSCYQVLGWQVTAG
KIGMQRCAASSQWFNERVLLSRYAHVPLGNFEVDWLLFTADVFFSRALHDQQQILWTSDD
GIPDLGGIFEGDTCFVDEVSQPAFTYPGAYRRVAVELKIHHLAVNALLKSSQIEEMEGGS
LFGYDHEMHSGSHVPETDFDETTSCAPAFRVLKQLIQRCMSDAAASGNVFADAILQHLYR
WLCSPLSKLHDPALHRVLHKVMKKIFAHLLAELRKLGATLIFANFSKIIIDTGKMNLPAA
HAYCDCLLKTLHSRDLFQWIDLEPLHFWHSFLFMDQYNYGGIQAKITTGSDVEITEDESQ
VEIISSWNIAEYLPKETQDHFILIASEFMYIPWKYSREQIRMPMATTDGSTCTPSITITD
AERLEASVTEYLKDQVSSYFTQKLFRIVEDTLHHFKGKKKIDEGDSKNRGLSQTSDSNPY
KGDAALEFIKHVCAVLSLDHNVQHDILKMRKNLLKIVRVKEFSPEAQFHDPCPSFTLPNV
ICSYCNDCRDLDLCRDSSLLDQEWRCAAPQCGQPYNREQMENALLQIVRQRERLYHLQDL
VCLRCRQVKGAHLVEQCICGGLFRCKESASEFQSKMLVFRDISIRQKFQLLQDCTSWILE
VR
NT seq 6669 nt   +upstreamnt  +downstreamnt
atgaacggagatcgaaggcgaagggatcagttcaattccagaagaaatcaatcgaagcag
aagcttcggctcaacgctgaagaagttctcgaagcaaaactaggttacgatcttttcact
gaaggcgagaagaagctcggatggctgcttacactggctccttcgtcttgggaagaccag
gagacgaacaagatttatagttgcgtggatctatattttgtttcgcaggatgtgtctaca
ttcaaaattaagtacaagtttccgccttatttttatgctgctaccaaggacaaaactcat
cttgaagttgaggcatatcttagacgcagatatgaaggacaaattgcggacatagagata
gtagataaagaggatttggacctaaggaatcatctttctggtttgcgtagaacatactta
aagatcagctttgataccgttcaacaattaatgtctgtaaagagtgatctggtgcatgtg
gttgagaggaaccaagcaaagatggatgctgctgaagcatttgataatgtatacaacaat
aatagcaaagaaagactgcaagattatatagattatatctttgatcttcgtgaatatgat
gttccataccatgtgcggtttgcaattgataatgatattagatgcggacagtggtacgat
gtcattgtatctggtagcagtatattgctagataagagaacagatcttcttcaacgtgct
gaagttcatgtctgtgcgtttgatattgagacaaccaaacttcctctgaaatttcccgat
gctgagtatgatctgataatgatgatatcatatatgatagatggacaaggctacttgatc
attaataaagagtgcgtaggagaggatattgaagatttggaatatacacctaagccagaa
tttgagggttatttcaaagtaacaaatgcgaagaatgaggaagagcttctcaaattatgg
tttgcacacatgcaagaggtgaaacctggcatatatgttacttataacggtgatttcttt
gactggccattcttggagaaaagagctgcacattatggggttaaaatgagtgaggaaata
ggtttccagtgtgatgacaatcaaggggaatgccgtgcaaagttttcttgtcatcttgat
tgctttgcttgggttaaacgagacagctatctccctcaaggaagccatggtctaaaggct
gttacaaaggcaaaactgggctatgatccattggaggtgaaccctgaagacatggttcgc
tttgccatggaacaaccccagacaatggcttcttattctgtatcagatgctgttgcaact
tactacctatacatgacatatgttcatccatttattttctcccttgcaactatcataccc
atgccacctgatgaggtcttgcgtaagggaagtggaacactttgtgaaatgcttctcatg
gtccaggcatttagggccaatgttgtctgtcctaacaaacaccaagaggatccagagaag
ttctataacaaccgccttctggaaagtgagacatatataggagggcatgttgagtgccta
gaaagcggtgtcttcagatctgatcttcctacaaaatttcagctggatccatctgcatat
gagcaattaattgggaatcttgatcgcgatttacattatgctatacaagtagaaggaaaa
atgggcctcgattcaattactaactatgaagatgtgaagaaagctattatggacaagctt
attttgttgcgagatcatccaatacgtgaggagtgtcctctaatataccatctggatgtt
gctgctatgtacccaaacattattttgacaaacaggcttcagccgccatcaatagtttca
gatgtagtatgcactgcatgtgatttcaatcgtccgggaaaaaattgtcttcggaaactt
gattgggtttggcgaggtgaaacctatatggcaaaaagaagtgattattatcatataaag
aagcaaattgagtctgagctggttgagtatggtggtgatcagtcgtcgaaaccttttatt
gacctgcccaaagcagaacaaaagttgaagctaaaagagcgtttgaagaagtactgccag
aaggcatataaaagggttcttgacaagcccataactgagcttagagaagctgggatatgc
atgcgtgaaaatcctttctatgtggatactgtgcgaagttttcgagacaggaggtacgag
tacaaggggcttaataaagtatggaagggaaaactagcagatgcaaaagcaagtggaaat
ccaatgaaggttcaggaagcacaggatatggttgttctctatgattctttacagctcgct
cataaatgcattcttaattcattttatggatatgttatgcgcaagggtgctagatggtac
tcaatggaaatggctggcgttgtcacctatactggtgccaaaatcattcaaaatgctcgt
ttactagtggaaaaaattggaaggcctctggaactggatactgatggcatctggtgtgct
cttcctggatctttccctgaaaactttacattcaaaacaaaagatgcaaagagaaagctc
acaatatcatacccctgtgtcatgcttaacgttgatgtggcaagaaacaacactaatgac
caatatcagacactgcaagatcctatcactaagacatatactacacacagtgaatgctcc
attgaatttgaagtggatggaccatacaaggctatgattcttccagcttcaaaggaagag
ggaattttaattaagaagaggtatgctgtatttaatgatgatggaagcttagcagaacta
aaaggttttgaaatcaagagaagaggtgagctgaagctcataaaagttttccaggcagag
gttttcgacaagttcctgcacgggtcaacattagaggaatgctatgcagcagttgctgca
gttgcaaaccgatggctagatcttctggataatgaaggaattgatattgctgatagcgag
ttgcttgattacatatcagaatcaagcactatgagtaaatccttagttgagtatggagaa
caaaagtcctgtgctgtgactactgcaagacgacttgctgattttcttggggatacaatg
gttaaagacaaaggactaagatgtcaatatattgttgcacgtgaaccacagggtactcca
gtaagtgagcgcgccattcctgttgccatctttgaaacagatacagaaattggtaaattc
tacctacgcaaatggtgcaaaatttctgctgatgcagccattcggtctatcattgactgg
tcttattacaagcaacgtctttnnnnnnnnnnctccatcttatattccaagcaaatgctt
cttgtttcccttaatttaatactggcccgttatttgcaggtttctaatcctgttcctaga
gttcttcatcctgactggctgcacaaaaaggttcgggagaaggatgacagatttcgccag
cgaaaattggttgatatcttcagtacaatgagtaaagatgcgggtgatccagattgtggg
gatctagaagactttgcgaacaaacaatcttcttctaggagtgggcctaggcctatagtt
cgtagctttgaaattaacaaggaaaattatttctccaggccagcctgtcccgtatccgaa
atgcctgcaaataaccagcaggacaatgcagctgccattaggttcccccatcctctcatg
ccgtcacatcaaaatggctccacgactgaaagtattgacagagatactgattatcaagga
tggcttcaactcaagaagagaaaatggagagaaattcgcgaggaaaggaagaggcgtaga
ttaggaaacagggggaaaccatctcaagctgttggtgcaactaaattacctcgatctgtg
tctagctgtaggcgagatcaagataagaacggagttagttcattcttcagaaaacatgag
ttttctcttatcaggtcacactggcagataatacagcttgtttcaagcacacatcctggg
cgctttttcgcttgggtcattgctgatggaataatgaacaaaatctccataactgttcct
agagtgttttatctcaattctaaagcgcccgttactgaagaatttccagggaggcgtgtt
aataagattcttcctcatagcagaccagttttcaatctaatcgaggtttgcatagatgaa
gatcaattcagggcggaaagcagaaaacttgctattcacttagccgatccagaagtcgag
gggatatatgaaactaaggttccattagaatttaatgcaatcctccagattggttgtgtt
tgtaaggtggacaaaaccgcaagggttcgtaatgcgcaggatggttggaatatgagcgag
ttacagatgaagactacaactgaatgctcttatttggagcaagggatttcttttttctat
ttgtatcacagtttcttggagggaagggggatatatattgcatatattgctgtatctagc
accatatctgccattgttgtcaatccatttcaaaacaaagaactctcctcatctcttctt
gaaaaacaattccgtgaagcttgccaagcgttgtccattgaccctccagcacatggaagt
cacataactttcaaggtggactatgttaaatcaatcgaagctggcgagaagcatttgcaa
agagcattaactgaattcagagggaagaatgctgggccaactattggtctcatagaatcc
ccaaacttccaatccattaaatcagctataagagttttagatgatttcccttgtgtcagc
attccatgtaatgctcgtgacagctgttatcaggttcttggttggcaagtcacggctgga
aaaattggcatgcaacgatgtgctgcctcgtcacagtggttcaatgaacgagttcttcta
tcaagatatgctcatgtacctttaggaaattttgaggtcgattggcttctttttactgct
gatgttttcttctctagggcattacatgatcaacagcagatactttggacatctgatgat
ggcattcccgatctgggaggtattttcgagggagatacatgctttgttgatgaagttagt
caaccagcttttacttatcctggggcctacagaagagtggcggttgaattaaagattcat
catttagctgtcaatgctcttctcaaaagcagccaaattgaagaaatggaaggaggatct
ttatttggatatgaccatgaaatgcattctggatcacatgttcctgaaactgattttgat
gaaactacctcatgtgcacctgcatttcgagtacttaagcaactgatacaaagatgcatg
tcggatgcagcggcatccggaaatgtatttgctgatgctatactgcaacacctttatcga
tggctttgcagccctctctccaaacttcatgatcctgctcttcatcgtgttctgcacaag
gtcatgaaaaagatttttgctcatttgttggctgaacttcggaaacttggggccacacta
atctttgcaaatttctctaaaattattatagacactggaaaaatgaatctgccagcagcc
catgcatactgtgattgtttattaaaaactctgcattcaagggatctttttcaatggatc
gatcttgaacctttgcatttctggcattctttcctatttatggatcagtataactatggg
gggattcaagccaaaatcacaaccggaagtgatgtggaaattacagaggatgaatctcag
gtggaaatcatatcgagctggaatatagcagaatacctgccaaaagaaactcaggatcat
tttattcttatcgcctctgagttcatgtatatcccttggaagtactcaagagagcaaatt
agaatgcctatggctactacagatggtagtacatgtactccatcgatcactatcacagat
gctgaaagacttgaagcatctgttacagagtatcttaaagaccaggtcagcagttacttc
actcagaaactttttcggatcgtggaggatactcttcaccacttcaaaggaaagaagaaa
atagatgaaggtgattctaaaaaccgtggactatcccagacgtctgattctaatccatat
aaaggtgacgctgcattggaattcatcaaacatgtctgtgccgtcctctctctggaccat
aatgttcagcatgacattctgaagatgagaaaaaatttattaaagattgttcgggtgaag
gagttttccccagaagcacaattccatgatccgtgtccatccttcacgcttccgaatgtt
atttgcagctattgcaatgattgccgtgaccttgacttatgtcgtgattcatcacttctg
gatcaagaatggcgctgtgccgcgccacaatgtgggcagccgtacaatcgtgaacagatg
gaaaatgctcttcttcaaatagttcgacagagggaaaggctgtaccatctgcaggacctt
gtgtgccttagatgcagacaagttaaaggcgcgcatttggtagagcaatgtatatgtggc
ggcttattcaggtgcaaagaatctgcttcggaatttcagagcaaaatgctagtgtttagg
gacatttccattcgtcaaaagttccaactgctacaggattgtacctcttggattttagaa
gtgaggtga

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