Asparagus officinalis (garden asparagus): 109823817
Help
Entry
109823817 CDS
T05243
Name
(RefSeq) LOW QUALITY PROTEIN: branchpoint-bridging protein-like
KO
K13095
splicing factor 1
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109823817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aof03041
]
109823817
Spliceosome [BR:
aof03041
]
Complex A
Other components
Complex A specific factors
109823817
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF1-HH
KH-I_KHDC4-BBP
RRM_1
KH_1
zf-CCHC
KH_12
PHD_4
KH_PNO1_2nd
RRM_5
zf-CCHC_2
RRM_7
Motif
Other DBs
NCBI-GeneID:
109823817
NCBI-ProteinID:
XP_020245797
LinkDB
All DBs
Position
9:57199925..57202507
Genome browser
AA seq
553 aa
AA seq
DB search
MKDFTADLDPEVQSLNVRLLEISRLLQSGLPLDERPEGARSPSPEPIYDNMGIRINTREF
RARERLNKERQEIISKLISKNPAFRPPADYRPPKLHKKLYIPMKEYPGYNFIGLIIGPRG
NTQKRMEKETGAKIVIRGKGSIKEGRIGQKRDLKPDPAENEDLHVLVEAETQEAVDALLA
AGMVEKLLQPVDEGLNEHKRQQLRELAALNGTIRDDEFCRLCGEPGHRQFACPARTSTFK
SDVLCKICGDGGHPTIDCPMKGSGKKMDDEYQNFLAELGGAAPDSQTKLSSALPLMGSGS
TGSNLPWAGGSGIAIGQAGAANGIKKEYDETNLYIGYLPPTLEDDGLIRLFSAFGEIVMA
KVIKDRITGLSKGYGFVKYSDVSQANNAISSMNGYHLEGRAIXXXXXSYGPAPVHWGPPV
PPPQYSPYPPPPPGSSMYTPVPPPYGAQYPPPPPPPVTQTAVSSEAMQNYPPGVQPQSSM
YGSVPPPYPPHPMGYAPYYNVQPPLSTDASQGIANVPWASNPPSQPPRSQPAAEQPASYG
GDTEYEKFMSEMK
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacttcacggccgatctggaccccgaggtacagagcttgaacgttaggcttctt
gaaattagccgccttttgcagtctggattgcccctggacgagcgccctgagggtgctcga
tccccgtcgcctgaacctatttacgataacatgggaattaggatcaatactagagagttt
cgagcccgagagaggcttaataaggaaaggcaagagattatatctaaacttattagtaaa
aacccagcctttcggcctccagctgattataggcctcctaagctacataagaagctttat
attccgatgaaagagtaccctggttacaattttatcggattgatcatcgggccgagaggg
aacactcagaagagaatggagaaggagactggagctaagattgtgattagaggaaaaggg
tccataaaagagggaagaatagggcagaagagggacttgaaacccgaccccgctgagaac
gaggacttgcatgtgttggtcgaggctgagactcaggaggcagtggatgctctgctggct
gctggaatggtggagaaattgctgcagcctgtggatgagggtttaaatgagcacaaaagg
cagcagttgagggagctggcggcgttgaatgggactattagggatgatgagttctgtagg
ctgtgtggtgagcccgggcataggcaatttgcatgtcctgctaggacttcaacctttaag
agtgatgttttgtgtaagatttgcggcgatggtgggcacccaaccattgattgcccgatg
aaaggaagtggaaagaaaatggatgatgagtatcagaacttccttgctgagcttggagga
gctgcacctgactctcaaacgaagctgagctcagcattgcctctaatgggatcgggtagt
actggctccaatcttccttgggctggagggagtggcattgctattggacaagctggagca
gcaaatggaatcaagaaggaatacgatgagaccaatctgtacattggttatcttccccct
actcttgaagacgatggtctcataagactattctcagcttttggggagattgtgatggct
aaggttatcaaggataggatcactggactgagcaaagggtatgggtttgtgaagtactct
gatgtctctcaggccaataatgctatttctagtatgaatgggtatcatcttgaagggaga
gctatangnnnnnnnnnnnngagttacgggcccgctccggttcattggggtccaccggtt
cctcctcctcagtattctccttaccctccacctccgccaggttctagtatgtatactcct
gttcctcctccatatggggctcagtatcctcctccaccgccgccgcctgtgactcaaact
gcggtttcaagtgaagcaatgcaaaattatcctccaggagtgcagccacagagcagtatg
tatggtagtgtaccgcctccatatcctcctcatccgatgggttatgcaccttattataat
gtacagccacctctaagcactgatgcctctcaggggattgcaaatgtaccatgggcttct
aacccaccatctcagccaccacgatctcagcctgctgcggagcaaccggcaagttatggt
ggtgataccgagtatgagaagttcatgtctgagatgaagtga
DBGET
integrated database retrieval system
