Asparagus officinalis (garden asparagus): 109824172
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Entry
109824172 CDS
T05243
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
109824172
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aof03032
]
109824172
03400 DNA repair and recombination proteins [BR:
aof03400
]
109824172
DNA replication proteins [BR:
aof03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
109824172
DNA repair and recombination proteins [BR:
aof03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
109824172
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PTCB-BRCT
BRCT
BRCT_2
LIG3_BRCT
RTT107_BRCT_5
TopBP1_BRCT0
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
109824172
NCBI-ProteinID:
XP_020246293
LinkDB
All DBs
Position
9:2932597..2942871
Genome browser
AA seq
855 aa
AA seq
DB search
TNVFLSRNLVAPEVYDAVHDALKLNGANVFLCCDPSRNNPDDFHVISSSDHEKFEVLKSK
GCNLLGPQCILSCAKEHRILPKQGYTCCLAMDGVKVLASGFERDKKVTIEKLVTAMGGIL
QTRASLDVNFVVVKDVLAAKYKYALNVLKKPILDLNWLHRCWSEHRVVPQEPFRILPFTG
LTICVTRIPPDERKEIEKLIVQNGGRYSADLTKKCTHLVSDAPVGDKYVVAKRWGHIHVV
TRKWIDQCIAKKGCLDEGPYAVDRTPKSCNGMKTLQKEQCYQEFSNVSSQPASRPAVEDL
EATLSQNIASSFSHDHVININRYEKREVRRLAAWGVIHVVKSSWLEECDRTKKELSVSSR
HVAVELLFSKDRSCNVSDIKKATSSTYVPCMPIGPPTEGKLSAAQLIPESRIWREKSGNH
VNNGSYAEAATKYDPLAQLPAMNNERKNACRMEPKSYSLSAHNSRSSDIFKGKSFCFSRS
FPTEQRDEVIRWINEGGGMLVDDQRKKNADFIVERHGLLQSATDVSHSIVVSTHWIRSSL
DDGCMLDIQSHIIYSPLCCHIPLPGFECLRFCVSQYEEKDRLLLKNLSVALGAKFSSKLT
KKSTHLICKFTNGPKYEAACNWGIQSVTAEWLTECITQDKMVPPDAFRPRPVTVEDKEAG
LCTVSQYPTQAANMVSGPQQLLSQSQGPMSSLKGTTVNSSTFGKRQRLPESNNEGDASKK
SKVPEDVKGGSNSIPDVADAIEDLLAQSNLIQDMKLPGTSSCDQSIFSSDHSSILGQNHP
KPRSTYDISRLWLNRTENKELVPNRVGHEGKVGGFDSFSETQTESQVVGYEEDLTGRQKI
IDRVRSQNLTLTPDK
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
accaacgtgttcctctctcgcaatctcgtagctcccgaggtctacgacgccgtccacgac
gccctaaagctcaacggcgccaacgtcttcctctgctgcgatccttctagaaacaacccc
gacgatttccacgtcatctcttcttctgaccacgaaaagttcgaggttctcaaatctaag
gggtgcaatctcctcgggccacaatgcattctctcctgtgcgaaagaacatagaattttg
cctaaacaaggttatacctgttgtcttgcaatggatggcgttaaagtgctagcctctgga
tttgaaagggacaagaaggtgacaatcgaaaaactagtgactgctatgggtgggatattg
cagacaagggcatccctagatgtcaactttgtcgttgtaaaggatgttttagctgctaag
tataaatatgctttaaatgttcttaagaaacctattctcgacctgaactggttacatcgg
tgttggagtgagcatcgtgtcgtgcctcaggagcctttcagaattcttccttttactggc
ttgacaatttgcgtcactagaattcctccagatgaacgaaaggagatcgagaagctgatt
gtacagaatggcggccgttattctgctgatcttacaaagaagtgtactcatttagtttca
gatgctcctgttggtgacaagtatgtggttgcaaaaagatggggccatattcatgttgtt
acacgcaaatggattgatcagtgtatcgctaaaaaaggttgtctagatgaagggccttat
gccgttgatagaactcctaaatcatgtaatggcatgaaaactttgcagaaagaacaatgt
tatcaagaattcagtaacgtgtcttctcagcctgcttcacgaccagcagttgaagacctt
gaagctacactgtcacagaacatagcttcttccttttcacatgatcatgtgataaacatt
aatcgctatgaaaaaagagaagtccggcgcttggctgcttggggtgtcatccatgtggta
aaatcctcctggctggaagaatgtgatcggacaaagaaagaactttctgtatcctcaagg
cacgttgctgtggagctactattctcaaaagatcgatcttgcaacgtttctgacatcaag
aaggcaacgagctccacttatgttccttgtatgcccataggtccaccaactgagggtaaa
ctgtctgcagcacagttgataccagagagtcgaatatggagagaaaagtccggaaatcat
gtaaataatggtagctatgcagaagcagcaactaaatatgatcctcttgcacaattacct
gcgatgaataatgagcgaaaaaatgcctgcagaatggaaccgaagtcttacagtttgagc
gcccataacagcagatcatccgacatctttaaggggaaatcattctgcttttctcgttca
ttccctacggaacagagagatgaagtcattagatggattaatgaaggcggaggaatgttg
gtggatgatcaaaggaaaaagaatgcagatttcattgttgagcgccatggtctgcttcaa
tctgctactgatgtatcccactctattgttgtctccactcattggatacgctcttcacta
gatgatggttgcatgctggatattcaaagtcacattatttactcgcctctgtgctgtcat
attccgctacctggctttgaatgccttcggttctgtgtttctcaatatgaagagaaggat
agattgttgttgaagaatttatctgttgctcttggtgctaaattctcatccaagctgacc
aaaaaatctacccatttaatctgtaagttcactaatggtcctaagtatgaggctgcttgt
aactgggggattcaatcagttactgcagagtggcttactgaatgcatcacgcaggataag
atggttcctcctgatgcatttcgacctagaccagtcactgttgaggacaaggaagcaggt
ttgtgcactgtgagtcaatatcctacacaagcagctaacatggtttcgggaccacaacaa
ttgcttagtcaatctcaggggccaatgagtagcctgaaagggactactgttaactctagt
acgtttggaaaaaggcaaagattacctgaatctaacaatgaaggtgatgcatctaaaaag
agcaaggttcctgaagatgttaaaggtggttccaattcgattcctgatgtggcagatgct
atcgaggacttgttagcgcagtcaaatttgatccaagacatgaaattgcctggcacgtcg
agttgtgatcaaagtatattctcatctgatcactcatctattcttggtcaaaatcatcca
aaaccccgctcaacttatgatatttcgagactttggttaaatagaaccgagaacaaagag
cttgttccaaatcgtgtaggccatgaaggaaaagttggcggttttgattctttcagtgaa
acacaaacagagtctcaggttgtggggtacgaagaagatttaacaggaagacaaaagata
atcgatagggttcgatcacaaaacctaaccttgactccagacaagtga
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