Asparagus officinalis (garden asparagus): 109825010
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Entry
109825010 CDS
T05243
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03013
Nucleocytoplasmic transport
aof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109825010
03015 mRNA surveillance pathway
109825010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109825010
Enzymes [BR:
aof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
109825010
5.6.2.5 RNA 5'-3' helicase
109825010
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109825010
mRNA cycle factors
Common to processing body (P body) and stress granule
109825010
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NPHP3_N
NAT10_TcmA_helicase
UvrD-helicase
nSTAND3
ATPase
PhoH
SRP54
AAA_16
AAA_22
Ribosomal_S13_N
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
109825010
NCBI-ProteinID:
XP_020247261
LinkDB
All DBs
Position
10
Genome browser
AA seq
1248 aa
AA seq
DB search
MDSQSNLYETASQPDTTAGDAYTFIEFNTQGDGEDDEFGGYPEFRELSQAPRSSAWPPPX
GSRPPHSDRPPSDVSPAPSSSGKARSAPDVDPLMAGIGNLSFEETGDDEGFEYGKGSFVE
HACRYCGIHNPACVARCNIPSCRKWFCNSRGHTSGSHIVNHLVRAKHKEVCLHKDSPLGE
TILECYNCGCRNVFLLGFISAKTDSVVVLLCREPCLNVNALKDMNWDLSQWCPLIDDRCF
LPWLVKVPSEQEQLRACHISAQQINKVEELWKTNPDASLEDLEKPGVDDEPQPVSLKYED
AYQYQNVFAPLIKLEADYDKAMKESQTKENVTIRWDIGLNKKRVAYFVFPKEDNELRLVP
GDELRLRYSGDASHPAWQSVGHVIKLTAQEEVALELRASQGVPVDLTHGFQVDFVWKSTS
FDRMQGAMKTFAVDETSVSGYIYHHLLGHEVELQVVRNTLPRRFGAPGLPELNVSQVFAV
KTVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISSTGL
KVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSNDEKKFKA
LKRATEREILQNADVICCTCVGAGDPRLSNFRFRQVLIDESTQATEPECLIPLVLGAKQV
VLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNNFY
EGTLQNGVTVNERQTSGIDFPWPVPTRPMFFYVQMGQEEISASGTSYLNRTEASNVEKIV
TTFLRSGVIPSQIGVITPYEGQRAYIVNYMSRNGSLRQQLYKEIEVASVDSFQGREKDYI
ILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHEC
LVEGPLNNLKQSMVQFQKPKKVYNDRRFLYGAAPGDNFGPVNSSSSNPDKGGSRNRGHAY
MSFAPPNGTHKPGVHPSGYPLSRIPLPPFPGGPHSQPYAIPTRGALHGPIGAIPQAPHPG
NRGFGAGSGNAGGPIGGHLTHQQSSQQAAGNHGSAFNFPALDNANSQPSVGGPLSQTGFM
TQMPIHGLSQTFPEGFPIDSMSQEFLGDDFKSQGSHVAYNVADFSTQASQSGYGVDYPGP
HTGFTGSFLNQNSQPGYSHLGSGNDFMSQDYMSHGSQGLFTQAGFNGPSQDESSQSHFGV
SGPPLQSQGHMNPLYSQPFPQYNSQPINIQPPQQQNQSSSKQKVRYNG
NT seq
3747 nt
NT seq
+upstream
nt +downstream
nt
atggactcccaatcaaacctctacgagaccgcgtctcagcccgacaccaccgccggcgat
gcctacaccttcatcgagttcaacacccaaggcgacggcgaagacgacgaatttggcggg
taccccgagttccgcgagctctcccaggctccccgctcgtccgcctggcctccgccgncc
ggcagtcgccctccgcactccgaccgaccgccgtccgacgtgagccctgccccttcgtcc
tcgggaaaagcgagatcggcgccggacgtcgatccgctgatggcgggcattgggaacttg
agtttcgaggagacgggcgatgatgagggttttgagtacgggaaagggagctttgttgag
cacgcgtgtaggtattgtgggattcataacccggcttgtgttgctcggtgcaacattcct
tcgtgccgaaagtggttctgtaattcgagggggcatacttcgggctcgcacattgtgaat
catttggttcgagcaaaacataaggaagtatgccttcataaagatagcccactgggggag
actatacttgagtgctataattgcggttgcaggaatgtctttcttctcggatttatctcc
gcgaaaacagatagtgttgttgttctcttgtgtagagaaccttgcttgaatgtcaatgca
ctgaaagacatgaactgggatctcagccaatggtgtccccttattgatgataggtgtttt
ctcccttggttggtcaaggtcccttctgaacaggagcagcttagagcatgccacattagc
gctcagcagatcaacaaggttgaagagctgtggaaaacaaatccggatgcatctttggag
gatcttgagaagccaggagtggatgatgaaccccagcctgtatccttgaagtatgaagat
gcttatcagtatcaaaatgtgtttgcacccctcattaaacttgaagctgattatgataag
gcgatgaaggagtcacagaccaaggaaaatgtgacgatacgatgggatatagggcttaac
aagaaacgagtagcctattttgtgtttcccaaggaggataatgaactaaggcttgttcca
ggagatgagttgcgtctgagatattcaggggatgcatctcatcccgcatggcagtctgtg
gggcatgtgatcaagctaactgctcaggaggaagtagcactggaactccgtgcaagtcag
ggagtccctgtagatttgacccatggtttccaggtggactttgtttggaagagtactagc
tttgatcgaatgcaaggtgcaatgaaaacttttgctgtggatgaaacaagtgtcagcgga
tacatataccatcacctcttgggacatgaagtggaacttcaagttgtacgcaatacacta
cctcgtcgtttcggtgctccaggtcttcctgaactaaatgtatctcaggtttttgctgtt
aagactgtccttcagaaaccaattagtttgatacaagggcctcctggcactgggaaaaca
gttacatctgcagcaatcgtataccacatggctaaacaaggacaaggacaggtcttggta
tgtgctccgagcaatgtggctgtggaccaactggctgaaaagataagctcaactgggtta
aaggttgttaggctttgtgccaaatcaagagaggctgtcagttctcctgtggagcattta
acacttcactatcaggttcgacatctagatacatctgagaaaagtgaacttcacaaactc
cagcaattaaaagatgaacagggtgaattgtcaagcaatgatgaaaagaagtttaaggca
ttgaaaagggccactgaaagagagatattacagaatgctgatgtcatttgttgcacctgt
gttggtgcgggcgatcctcgactatcaaatttccgattccgccaggttcttattgatgag
tctactcaggcaacagaacctgaatgtcttattccattagttcttggtgcgaaacaggtt
gtccttgttggagaccattgccagcttggcccagtcattatgtgtaagaaagcagctcgt
gctggattagctcaatctctttttgagcgccttgttcttcttggactgaaacccataaga
cttcaggtccagtatcgcatgcatccttccctatctgaatttccttcaaataacttctat
gaaggtacccttcagaatggggtgaccgtaaatgaaagacaaacatctggcattgatttt
ccttggccagttcctacacgtcctatgttcttctatgtccagatggggcaagaggagatt
agtgcaagtggaacatcatatttgaatagaactgaggcttcaaacgttgaaaagattgta
acgacatttttgaggagtggtgtcatacctagtcagataggagtcataacaccatatgaa
ggacagagagcatatattgtaaattatatgtcgaggaatggctctctgagacaacagctg
tataaggaaattgaggttgccagtgttgactctttccaaggaagagagaaagattacatc
atcttgtcttgtgtgcggagcaatgagcatcagggtattggatttcttaatgatccacgt
aggttaaacgtggccttgactagagctcgttacggcattgttatcttggggaatcctaaa
gtcttaagcaagcagccactatggaatggcttactaacacattataaggaacatgaatgc
ctcgttgaagggcctttgaacaatttgaagcaaagtatggtacagtttcaaaagccaaaa
aaggtttacaatgatcgtaggtttctatatggagcagctcctggtgacaactttgggcct
gtcaactcatcaagttcgaatcccgataagggaggaagccgcaatagaggtcatgcatat
atgtcatttgctcccccaaatggcacccataagcctggagtgcacccatcaggatatcct
ctatcaagaatccctctccctcctttccctggaggccctcattctcagccgtatgcaatt
ccgactcgtggagctcttcatggacctattggagccattccgcaggcccctcatccagga
aatagaggttttggggctgggagtggtaatgctggtggccctattggtggtcaccttact
catcagcaaagttctcaacaagctgcgggtaaccatggctctgcatttaatttccctgct
ttggacaacgctaatagtcagccttctgttggaggtcccctatcccaaactggatttatg
acacagatgccaattcatgggcttagccaaacatttccagaaggatttcctattgatagt
atgtctcaggaattccttggcgatgacttcaaaagccagggatcacatgttgcatataat
gttgctgatttttctactcaggcgtcacaaagtggatatggtgttgattacccgggacct
catacagggtttaccggaagcttcctaaaccagaattcacaaccaggatattcccattta
ggcagtggaaatgatttcatgtcacaggattacatgtctcatggatcgcaaggtttattt
acacaagcagggtttaatggtccatcacaagatgaatcttcacagagccattttggtgtg
tcgggacctcctcttcagtcgcagggccacatgaaccctctttactctcagcccttccct
caatacaactctcaacctatcaatattcagcctccacagcagcagaaccagagctcttca
aagcagaaagttcgctataatggatga
DBGET
integrated database retrieval system
