Asparagus officinalis (garden asparagus): 109825103
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Entry
109825103 CDS
T05243
Name
(RefSeq) sm-like protein LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03018
RNA degradation
aof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109825103
09123 Folding, sorting and degradation
03018 RNA degradation
109825103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109825103
03041 Spliceosome [BR:
aof03041
]
109825103
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109825103
mRNA degradation factors
5'-3' decay
Lsm complex
109825103
Spliceosome [BR:
aof03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
109825103
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
109825103
NCBI-ProteinID:
XP_020247426
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Position
1:complement(63047210..63053377)
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AA seq
98 aa
AA seq
DB search
MSTGPGLESLVDQTISVITNDGRNIVGILKGFDQATNIILDESHERVYSTKEGVQQLVLG
LYIIRGDNICVVGELDEELDSNLDLSRLRAHPLKPVIH
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacgggtcctggccttgaatcgcttgttgaccaaactatatcagtcattacaaat
gatggaaggaacattgtggggatcttgaaaggctttgaccaagctaccaatattattctg
gacgagtcacatgagcgggtttactcgacaaaggaaggtgtgcaacaacttgttcttggt
ttgtacatcataaggggtgataatatttgtgttgtgggagaattagatgaggagctggac
tcaaatctggacctatccagacttagggcacaccctctgaagcctgtgattcattga
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