Asparagus officinalis (garden asparagus): 109825281
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Entry
109825281 CDS
T05243
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 4-like isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109825281
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109825281
Enzymes [BR:
aof01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
109825281
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109825281
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109825281
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-GeneID:
109825281
NCBI-ProteinID:
XP_020247688
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Position
10:614956..629811
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AA seq
413 aa
AA seq
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MLRTLTLLPRFPSYISNSSSCCRVFKRKMSAKPAAPICPKFVSLEVGEDPTTSLFKDSRF
RVVSYNILAQVYVKSSYFPHSPSSSLKWKARSQAVLTDLKNLNADFLCIQELDEYDTFYK
SNMESHGYSCIYVQRDGQKRDGCGIFYKSRSAELVLHEEIHYNDLVTSVDYDTSSVETED
NDTKDQTSKATPEVSVKATNNSDHGDPNDPRVRLKRDCVGVLAAFKLSNPSQHLVVVAST
HIYWDPEWIDVKLAQVKYLLLRLTQFKELVSNKYCCTPSVIVTGDFNSTPGDEVYRYLVS
ANAAAESSGSPYKLCSLYGTNGGEPPFTNVTPGFTGTLDYIFLSSRGYLKPVSLLELPGP
ESADIVDGLPNLHHPSDHLPIGGDFEVLRFSSSTKLHEVEDDLVKLKIEEQKD
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgctcagaactctcactctccttcctcgtttcccatcatatatttccaattccagttct
tgctgtagggttttcaagcgcaagatgagtgcaaagccggcggcgccgatctgtccgaag
tttgtttctttggaagttggagaagatcctaccacgagtcttttcaaagattcaaggttc
cgtgtggtgtcatataatattttggcgcaggtttatgtgaagagttcttacttcccacac
tcaccatcttcatctctcaagtggaaagctcgttctcaagcggttctcacagaccttaaa
aatttaaatgctgacttcctctgcatccaggaattagatgaatatgataccttttacaaa
agcaacatggagagccatgggtattcctgtatttatgttcaaagagatgggcagaaacgt
gatggatgtgggatcttttacaagagtagaagtgcagaactggtcttacatgaagaaata
cattacaatgatctcgtgacctctgttgattatgatactagctcagttgagactgaggat
aatgatacaaaggatcagacgagcaaagcaacaccagaagtttcagttaaggcgaccaat
aatagtgatcatggagaccctaatgatcctcgtgtgagactgaaacgtgattgtgtgggt
gtgctggcagcatttaagcttagtaatccttctcagcacctcgttgttgtggcgagtact
cacatttattgggatccagaatggattgatgtaaagcttgctcaagtgaagtatcttctg
ctgagacttactcagttcaaggaacttgtttcaaacaaatactgttgcacaccttcagtg
attgtcacgggtgattttaattctactcctggtgacgaggtttacagatatcttgtatct
gcaaatgctgctgccgagtcttcaggatccccatataaactctgcagcctttacggtaca
aatggaggagaaccaccattcacaaatgttacaccggggttcacaggaactctagattac
atattcttatcaagcaggggctacttgaaaccggtcagtctactggaacttccaggtcca
gaatcagcagacattgttgacggacttccaaatttacatcacccgagtgatcatctgccc
attggtggtgattttgaggtccttaggttttcaagctcgactaagttgcatgaggtcgaa
gatgatcttgtcaaattgaagatcgaggaacagaaagattag
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