Asparagus officinalis (garden asparagus): 109825437
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Entry
109825437 CDS
T05243
Name
(RefSeq) LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 1-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
aof
Asparagus officinalis (garden asparagus)
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
aof03036
]
109825437
Chromosome and associated proteins [BR:
aof03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
109825437
microRNA pathway
RISC loading complex
109825437
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
dsrm
DND1_DSRM
Helicase_C
PAZ
DEAD
ResIII
Dicer_dsRBD
SNF2-rel_dom
Dicer_PBD
SLFN-g3_helicase
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
109825437
NCBI-ProteinID:
XP_020247880
LinkDB
All DBs
Position
10:complement(2149803..2168559)
Genome browser
AA seq
1795 aa
AA seq
DB search
MIKKNLKSGSNKREKKRKARKKESDRRRREGDYTRKRDRDWDRRDSRDRDRDRDRDWRDK
NRDRDRENRGYWARDSSGKLVFKTGSWEADSPRDSKRARLGGLEDEKRSPGKEEKKEKPA
EEQARKYQLDVLEQAKQKNTIAFLETGAGKTLIAVLLIKSLYNDMLKQDRKMLAIFLVPK
VPLVYQQAEVIREKTGYRVGHYCGEMGQDFWDSRRWQREFESKQVLVMTAQILLNILRHS
IIKMESIHLLILDECHHAVKKHPYSLVMSEFYHTTPKDKRPAVFGMTASPVNLKGVSSQE
DCAIKIRNLESKLDSVVCTVKDRKELEKHVPMPSEVIVQYDKAASLWSLHEQIKQIEVEV
EEAALSSSRKSKWQFMGARDAGSKEELRLVYGVSERTESDGAVNLVQKLRAINYALGELG
QWCAYMVAHSFLTALQNDERSNYQLDVRFQETYLKKVVALLQCQLSEGAVAGKNIKGIDA
DTTDAHCTDEIEEGELADNHVVSGGEHVDEIIGAAVADGKVTPKVQALIKILLKYQHTED
FRAIIFVERVVAALVLPKVFTELPSLGFIKCASLIGHNNNQEMRSGQMQDTIAKFRDGRV
TLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMLERENLSHET
FLRNARNSEETLRKEAIERTDLSHLKGTPKLVSLDTLPGAMYQVESTGAVVSLNSAVGLI
HFYCSQLPSDRYSILRPEFIMERHENPGSSSEFSCKLQLPGNAPFEKIEGPVCGSMRLAQ
QAVCLAACKKLHEMGAFTDMLLPDKGSGEEGEKVEKNEEGDPLPGTARHREFYPEGVAEI
LRGDWILYGRNCFHDPTEFHLFMYSVECVNVGTSKDPFLTQVSDFAVLFGNQLDAEVLSM
SMDLFVARTMTTRASLTFRGSIKLTGSQLVSLKNFHVRLTSIVLDVDVDPSTTPWDAAKA
YLFVPITREKLLDPVKEIDWGLVENITTTDAWTNPLQRARPDVFLGTSERTLGGDRREYG
FGKLRNGMAFGQNPHPTYGIRGAIAQFDVVKASGAVPTRTPAECPDNHWVEGKLFMADSC
IDVKDLVGRIVTAAHSGKRFYVDSVRYEMNAENSFPRKEGYLGPLEYSSYADYYRQKYGV
NLVYKKQPLIRGRGVSYCKNLLSPRFEHSEGQEGESEENLDKTYYVFLPPELCLVHPLPG
ALVRGAQRLPSIMKRVESMLLAVQLRDMINYPVPSIKILEALTAASCQETFCYERAELLG
DAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYHHALSKGLQSYIQADRFAASRW
AAPGVLPVFDEDTKEELGPXXXXNVETSKGVDDYDYDDLKEDGELEADSSCYRVLSSKTL
ADVVEALIGVYYVEGGKNAANHLMRWIGIQVDFDPGELEDMKPHDVPESIMRSIDFEVLE
GALNVKFKDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTNLPPGR
LTDLRAAAAVNNENFARVAVKNKLHVHLRHGSSALEAQIREFVKDVQEELLKPGFNSFGL
GDCKAPKVLGDIVESIAGAIFLDNGRDTSVVWQVFQPLLHPMVTPETLPMHPVRELQERC
QQQAEGLEYKATRAGNVATVEVFVDGVQIGVAQNPQKKMAQKLAARNALLALKEKEMEKE
KEMEIASSKDETSNGDKKSNLIFTRQALNDICLRKQWPMPQYRCVNEGGPAHAKRFVYAV
RVNTTDRGWTDECIGESMPSVKKAKDSAAVLLLELLSRCYPDSNNDKKSNQTKKQ
NT seq
5388 nt
NT seq
+upstream
nt +downstream
nt
atgataaagaaaaaccttaaaagcggaagcaataaaagagaaaagaaaagaaaagcacgt
aaaaaggagagtgatcggaggagaagagaaggggattacactaggaagagggatagggat
tgggatagaagagatagtagagatagagatagagatagagatagagattggagggataag
aatagggatagggatagagagaataggggttattgggcaagggattcctcggggaagctc
gtgttcaagacaggttcttgggaggcggattcccctagagactcaaaaagggcgaggttg
ggaggtttggaagatgagaagaggagccccgggaaagaggagaagaaggagaagccggcg
gaggagcaggcgaggaagtaccagctcgatgttcttgaacaagcgaagcagaagaacact
atagcttttttagagactggggcagggaagactctgatagcggtgctgcttattaagagc
ttgtacaatgacatgctgaagcaggatagaaagatgctggccatttttctggtgccaaaa
gttccccttgtgtatcagcaagcggaggtgattcgtgagaaaactggttatagagttggg
cactattgcggagagatgggtcaagatttttgggattcccggaggtggcagcgggaattt
gagtccaaacaggtactagtgatgacggctcaaatattgctgaacattctcagacacagc
ataattaaaatggaaagtatccatctcttgattttagatgagtgtcatcatgctgtaaaa
aagcatccttattctttagtgatgtcagaattttatcatactactccgaaggataaaaga
ccagctgtttttggtatgacagcttctcctgtcaacttgaaaggagtttcaagccaagag
gattgtgctatcaagattcggaatcttgaaagcaaattggattcggttgtttgtacagtg
aaagatcggaaggagctggagaaacacgttccgatgccttcagaagttatagtgcaatat
gataaggcggcttcattatggtctcttcatgagcaaataaagcaaattgaagtggaagta
gaggaagctgcactttctagttccagaaaaagcaaatggcaatttatgggagccagagat
gcaggatctaaggaagaattacgccttgtatatggtgtttctgagagaaccgaaagtgat
ggtgctgttaatctggtccaaaagttacgggctattaactatgctttaggcgaacttggg
caatggtgtgcttacatggttgcacattcatttttgacagctttgcaaaatgatgaaagg
tcaaattaccagcttgatgtcaggtttcaagagacatatttgaaaaaggtggttgcatta
ttacaatgccagttatctgagggagccgtggctggtaagaatataaaaggtatagatgct
gatactactgatgcccactgcacagatgaaatcgaggaaggagaattagctgataatcat
gttgtgtccggtggtgaacatgtggatgagattataggagctgcagttgcagatggaaaa
gtaacccctaaagtacaagcactaattaaaatacttctcaagtatcaacacacggaggac
ttccgtgcaattatcttcgtggagcgagttgttgctgctttagttctcccaaaggtgttt
acagagcttccatctctaggtttcatcaagtgtgcgagcttgattgggcacaacaataac
caggaaatgcgcagtggccaaatgcaagacactatcgccaaatttcgcgatgggcgggtt
actttattagtagctacaagtgttgctgaggaaggactagacattaggcaatgcaatgtt
gtcatccgctttgacctcgcaaaaactgttttggcatatattcaatccagaggccgtgca
agaaagcctggatcggattacatactgatgcttgaaagggagaatttgtcacatgaaacc
tttttgaggaatgctcgtaacagtgaagaaacactgagaaaagaggctatcgagagaacg
gatctgagtcatcttaagggcactccaaagttagtttcacttgatacattacctggagct
atgtaccaggtggaatcaactggggctgttgttagcttaaattctgcagttggcctaatc
catttttactgttctcagctaccaagtgacaggtattctatactacgccctgaatttatc
atggaacgacatgagaatcctgggagttcaagtgagttttcatgcaagcttcagcttcct
ggcaatgccccatttgaaaagatcgagggtcctgtatgcggttcgatgcgcctcgcacaa
caagcagtttgtttggctgcttgtaagaagctacatgagatgggagccttcactgatatg
cttttgccagacaagggtagtggggaggaaggggagaaagtagagaagaatgaagaagga
gaccctcttcctggaacagcaaggcatagggagttctaccctgaaggtgtggcagaaatc
ctacggggagattggattttatatggaaggaattgtttccatgatcccacagagtttcat
ctttttatgtactctgttgaatgtgtgaatgtcgggacttctaaggacccttttctaaca
caagtttcagactttgctgtactgtttggcaatcaactggatgcagaggttctatcaatg
tcaatggacctctttgttgctagaacgatgacaacgagagcatcccttaccttcaggggg
tctatcaaacttacaggaagccagctggtttcactgaagaacttccacgttagacttacg
agtattgtgcttgatgtggatgttgatccctcaaccactccatgggatgctgcaaaagcc
tatctttttgtccctatcacgcgtgagaagttacttgatcctgtgaaagagattgattgg
ggtttggttgaaaatataactacaactgatgcatggaccaatcctcttcagagggcacga
cctgatgttttcttgggaactagtgaacgaacccttggtggggatcgaagagagtatggt
tttggaaaattacgtaatggcatggcttttggacagaatcctcaccctacatatggtatt
cgaggagctatagcacagtttgatgtggttaaggcttcaggagcggttcctactcgaaca
cctgcagaatgtcctgataaccattgggttgaaggaaaattatttatggcagattcttgc
attgatgtgaaagacctggttgggaggattgtgactgctgcacactccggaaaaagattc
tatgtagattccgtgcgctatgaaatgaatgctgagaattcgttcccgagaaaagagggc
taccttgggcccctggagtacagctcgtatgctgattactacaggcaaaagtatggagtc
aatttggtttataaaaaacagccacttatacgaggtcggggtgtttcatattgcaagaat
ctcctgtctcctagatttgaacattctgaagggcaagaaggggaatctgaagaaaatctg
gacaaaacatactatgtcttcttacctcctgagctctgtctcgtgcatccgctccctgga
gctcttgttcgaggagctcaaaggcttccctccatcatgaaaagggtagagagtatgcta
cttgctgttcagcttagagatatgatcaattaccctgttccctctatcaagattttagag
gccttaacagctgcttcatgtcaagagacattctgttatgaaagagcggagctccttggt
gatgcatatctcaagtgggttgttagtaggtttctctttctcaaatatcctcaaaagcat
gagggtcagcttacaaggatgagacagcagatggtgagtaacatggtactatatcatcat
gccctgagtaaagggctccagtcctacatccaggctgatcgatttgcagcatccagatgg
gctgctccaggtgtgcttcctgtttttgatgaggacacaaaagaggagctggggcccnnn
nnnnnnncaaatgtagaaacaagtaagggagttgatgattatgattatgatgatctaaag
gaggatggtgaacttgaggctgactcgagctgctatcgagttctctcgagcaaaacacta
gctgatgtcgtggaggctctaattggggtatattatgtagaaggggggaagaatgctgct
aaccaccttatgaggtggattgggattcaggtggattttgatcctggagagctggaagat
atgaagcctcatgatgtacctgagagcataatgaggagtattgactttgaggtgctggaa
ggtgccctgaatgtgaagttcaaagacaggggcctgctggttgaagcaataactcatgct
tcaaggccctcttctggggtttcatgttatcaacgactggaatttgttggtgatgctgtc
ttggatcatctcataacaaggcatttatttttcacatacaccaatttgcctcctgggaga
ctgactgacctgagagcggctgctgccgttaacaatgaaaactttgctagggttgctgtt
aagaacaaactgcatgttcaccttcgacatggttcaagtgcccttgaagcacagatccga
gaattcgtgaaggatgttcaagaggagctactgaaaccagggttcaattcttttggtctt
ggggactgcaaggctcccaaggttcttggtgacatcgtggaatccattgctggtgccatt
ttccttgacaatggacgagacacttcagtagtctggcaggtctttcaacctttgctacat
ccgatggtgaccccagagactcttcccatgcaccccgtaagagaactccaagagagatgt
cagcaacaagccgagggcttagaatacaaagccacacgtgcaggaaatgtggcaactgta
gaagtttttgtcgatggagtacaaatcggggtcgctcaaaacccacagaagaaaatggcc
cagaaattagccgcaagaaatgcgctcttagccttaaaagaaaaggaaatggaaaaggag
aaagagatggagattgcatcttctaaagatgaaactagtaacggggataagaaaagcaat
cttattttcacgaggcaagctctcaatgatatttgcttgaggaaacaatggccaatgcct
caatatcggtgtgttaatgaaggaggtcctgctcacgcgaagagatttgtttatgctgtt
cgagttaatactacagaccgaggttggaccgatgagtgcataggagagtcgatgcccagt
gtgaagaaagctaaagactctgctgctgttcttctcctggagcttctcagtagatgctat
cctgatagtaacaatgacaagaaaagtaatcaaactaagaaacaatga
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integrated database retrieval system
