Asparagus officinalis (garden asparagus): 109825496
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Entry
109825496 CDS
T05243
Name
(RefSeq) DNA excision repair protein ERCC-8-like
KO
K10570
DNA excision repair protein ERCC-8
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03420
Nucleotide excision repair
aof04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
109825496
09124 Replication and repair
03420 Nucleotide excision repair
109825496
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
aof04121
]
109825496
03400 DNA repair and recombination proteins [BR:
aof03400
]
109825496
Ubiquitin system [BR:
aof04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
109825496
DNA repair and recombination proteins [BR:
aof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
109825496
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_EML
WD40_MABP1-WDR62_2nd
NBCH_WD40
Beta-prop_SPT8
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_SCAP
WD_LRWD1
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_Nup120_160
Beta-prop_IFT140_1st
Beta-prop_WDR75_2nd
WDR54
Motif
Other DBs
NCBI-GeneID:
109825496
NCBI-ProteinID:
XP_020247940
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All DBs
Position
10:complement(69594446..69601740)
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AA seq
442 aa
AA seq
DB search
MWKEIRERESGSILPSCFSRRLRSRRVSSLELSNRKEIVSPHKGAVNSLQVDLTEGRYLL
SGASDGSAALFDVQHATDYEGGGMIAKHKSLFVVDKQHGHGHKFAISSAIWYPVDTGLFI
TGSFDHYVKVWDTNTTQVVMDFKMPGKVYGATMSSIATTHMLIAAGSADVQVRLCDIASG
AFTHTLSGHRDGVMTLEWSTSNEWILVTGGCDGAIRFWDIRRAGCFLVLDQSRSQLGRRP
PFLESTLKKGSVTRKLHAGQSVSAKTNGQPKKMSALHRGNTSTRGSVVQRVHPGMLSSHN
RATAHYGAVTGLKATRDGMYLLSSGSDSRLRLWDIESGCNTLVNYEAMRLQTSKALQLAI
NEDSSLVFVPCMATVKAYDMWSGMMYRTFRGHYEAVNCCCFSSQDQELYTGSNDRKVLIW
SPPNLAKEGDGSLEEDRDNWSD
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgtggaaagaaatcagggaaagggaatcgggctccatcctcccctcttgtttctcccgc
cgcctccgatctcgccgcgtctcatctctcgagctctccaatcgcaaggagatcgtcagc
cctcacaagggcgccgtcaactctctccaggtagatttaactgaaggacggtatctgcta
tctggagcatcagatggatctgctgctctttttgacgtacagcatgctaccgactacgag
ggaggaggaatgattgcgaagcacaaaagtctatttgttgttgacaagcagcatgggcac
ggtcataaatttgctatatcatctgctatctggtatccagtggacacagggctatttatt
acaggctcttttgatcactatgtcaaagtatgggatacaaatacgactcaagttgtgatg
gacttcaaaatgcctggaaaagtttatggcgcaacaatgtcctcaatagccacaacacat
atgcttattgctgctggaagcgcagacgttcaagtccgtctatgcgatattgcttctggg
gcatttacacatacattatctggtcatcgtgatggagttatgactctggaatggtctacc
tctaacgagtggattttggttactgggggttgtgatggcgccatacgtttttgggacata
agacgtgcaggatgtttccttgttttagatcaatcaagatctcagcttgggagacgccca
cctttcttggaaagcacattgaagaaaggttctgtaacaaggaaacttcatgcaggacaa
tcagtttctgcaaagaccaatggtcaaccaaaaaagatgtcagcccttcacagaggtaac
acttcaaccagagggtctgtggtgcagagagtacatcctggtatgttatccagtcataat
cgtgcgactgctcattacggtgctgtgactggactgaaagcaactagagatggcatgtac
cttctgagttcaggctccgattcaagattaagattgtgggatatcgaatctggctgcaat
acattagtcaactatgaagctatgcgcctacagacaagtaaagctttacagctagctatc
aatgaggattcttcacttgtctttgttccatgtatggcaacagtcaaggcatatgatatg
tggtctggtatgatgtatcggacattccgtggtcactatgaggcggtgaactgctgctgt
tttagttcgcaagatcaggaattgtacacagggagcaatgatagaaaagtgctcatttgg
tcaccaccaaatctagctaaggaaggagatggctctctagaggaagatcgtgataattgg
agcgactag
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