Asparagus officinalis (garden asparagus): 109825643
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Entry
109825643 CDS
T05243
Name
(RefSeq) THO complex subunit 1 isoform X1
KO
K12878
THO complex subunit 1
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03013
Nucleocytoplasmic transport
aof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109825643
09122 Translation
03013 Nucleocytoplasmic transport
109825643
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109825643
03041 Spliceosome [BR:
aof03041
]
109825643
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
109825643
Spliceosome [BR:
aof03041
]
Complex C
Other components
EJC/TREX
109825643
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
109825643
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Motif
Other DBs
NCBI-GeneID:
109825643
NCBI-ProteinID:
XP_020248096
LinkDB
All DBs
Position
10
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AA seq
663 aa
AA seq
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MRRKLHRRLRILLHQPVEDRAPVHVSSHADRDRVLEVFRRVILQPALPENCALQAVQEAI
KPQKQTVLVQDENQSLENALRTLLQELVSSAVQSGERMMQYGKSIDDGENAGGQIPRLLD
IVLYLCQKGHVEGGMIFQLLEDLTEMSTMKDCKEVFGYIESKQDVLGKQELFGRGKLVML
RTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNVTKYEKDAPEGV
SIDFNFYKTLWSLQEHFSNPASTTVAPTKWQKFFTNLMVVLDAFEAQPLSDDDGNANNVE
QEEAAFSIKYLTSSKLMGLELKDPSFRRHILIQCLILFDYLKAPGKNEKDGPPESMKEEI
KSCEERVKKLLETIPPKGKEFLQSIEHILEREKNWVWWKRDGCPPFEKQITEKRVGQDGV
KKRKPRWRLGNKELSQLWKWADQNPNALTDEQRVRTPSVMEYWKPLAEDMDESAGIEAEY
HQKNNRVYCWKGLRFSARQDLEGFSRFTDHGIEGVVPPELLPPEIRSKFHAKPTEKNKRV
KREDDSKGVAAQPEENQQVATPATETDGGSGAELEEGAIPMESDAAGLNIAQGGDTTPED
ATKQSPDIDMGQEAVHSEAEAEAEADAEADAEAEAEAEAKPDIKGDTESELSPDSETNPE
TKD
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgaaagctccatcggcgcctccgtatcctcctccatcagcccgtcgaagaccgc
gcccccgttcacgtctccagccacgctgatcgagatcgagttcttgaagtatttagaaga
gttatattgcaacctgctctccctgaaaactgtgcccttcaagcagtacaagaagctata
aaacctcagaaacagactgtacttgtccaagatgagaatcaatctctggaaaatgctctt
cgaacactactgcaagaactagtgtcttctgcagtacaatctggtgaaaggatgatgcaa
tatgggaagtcaattgatgatggggaaaatgctggcggtcaaataccacgtcttcttgac
attgtgctgtatctttgtcaaaaagggcatgttgaaggtggtatgatatttcagctgtta
gaagatttgacggagatgtcaaccatgaaagactgcaaagaggtttttggttatatcgag
agcaagcaagatgtattgggtaagcaagagctctttgggagagggaaattggtgatgctg
agaacatgcaatcaacttcttcgaagactctcaaaggcaaatgatgtggtattttgtgga
cggattcttatgtttcttgcacacttctttcccttgtcagagcggtcagctgttaatata
aagggagttttcaacacatcaaatgtgaccaaatatgaaaaagatgctcctgaaggagtc
tccattgatttcaacttctacaagaccttgtggagtttacaggaacattttagcaatcca
gcttcaaccactgttgccccaaccaagtggcagaagttcttcaccaatttaatggttgta
ctggatgcatttgaagctcagcctctgtctgatgatgatggaaatgctaacaatgttgag
caagaggaagctgcttttagcattaagtatctcactagcagcaagttgatgggtttagag
ttaaaagatcctagctttcgtcgacatatcttgatccagtgccttatattatttgactac
cttaaggcacctggaaagaatgagaaggatgggcctccagagagcatgaaagaggaaatt
aaatcctgtgaagaacgtgtgaagaagttgctcgaaactattccaccaaaaggcaaggag
ttccttcaaagtattgagcatatattagaacgagaaaaaaattgggtctggtggaaacga
gatggttgtccaccatttgaaaagcaaataactgaaaaaagagtgggtcaagatggcgtg
aaaaaacgtaaaccacggtggagactcggaaacaaagagctatcacagttatggaaatgg
gcagatcagaatcctaatgctttgactgatgaacagcgtgtccgcactccttcggtcatg
gagtactggaaacctcttgcagaggatatggatgaatctgctgggattgaagctgaatat
caccaaaaaaataaccgtgtttattgttggaaagggctgcgtttttctgccagacaggac
ttggaaggattttctcggtttactgaccatggcattgaaggagtggttcctccagagctt
ttgccaccagaaattcgttcgaaatttcatgctaaacctactgagaagaataaacgagtt
aagagagaggatgattcaaaaggtgttgcagctcagcctgaagaaaaccagcaggttgca
actccagcaactgagactgatgggggaagtggggccgagctagaagagggagcaattcca
atggaatctgatgccgcaggcttgaatattgcgcagggtggagatacaacaccagaagat
gctacaaagcagagccctgatattgacatgggccaggaggcagtacattctgaagctgaa
gctgaagcagaagcagatgcagaagcagatgcagaagcagaagctgaagctgaggccaaa
cctgatattaaaggagatactgaatcagagcttagtccagattcagaaacaaatcctgag
actaaagattga
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