Asparagus officinalis (garden asparagus): 109826762
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Entry
109826762 CDS
T05243
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109826762
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109826762
03041 Spliceosome [BR:
aof03041
]
109826762
03009 Ribosome biogenesis [BR:
aof03009
]
109826762
03016 Transfer RNA biogenesis [BR:
aof03016
]
109826762
Enzymes [BR:
aof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109826762
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
109826762
Spliceosome [BR:
aof03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
109826762
Complex C
U4/U6.U5 tri-SnRNP related factors
109826762
Ribosome biogenesis [BR:
aof03009
]
Eukaryotic type
Pre-60S particles
Helicases
109826762
Transfer RNA biogenesis [BR:
aof03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
109826762
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
MTR4-like_stalk
DEAD
Helicase_C
DEXQc_Suv3
ResIII
Motif
Other DBs
NCBI-GeneID:
109826762
NCBI-ProteinID:
XP_020249371
LinkDB
All DBs
Position
10:56599060..56617796
Genome browser
AA seq
978 aa
AA seq
DB search
MSSLKRKTLEEPAPDLKSPPQKSQKGKENGNDEPIRVDEPVACLHDVSYPENYVQPRSQS
KPSIENSKPAKEFPFELDPFQSEAIKCLDSQESVMYAIAMSLRNQQRVIYTSPIKALSNQ
KYREFKEEFSDVGLMTGDVTIEPSASCLVMTTEILRSMQYKGSEVMREVAWIIFDEVHYM
RDRERGVVWEESIVLAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVYTDYRPTPLQ
HYIFPSGGDGLYLVVDERGKFREDNFQKALNALVPASEGDKKRENGKWKKGLLSGRPSEE
SDIFKMVKMIIQRQYDPVIIFSFSKRDCEFLAMQMAKLDLNEEDEKINVETIFWSAMDML
SDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNM
PAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDQRGICILMVDEKMEPSTAKMM
VKGSADCLNSAFHLSYNMLLNQMRCEDGDPENLLRNSFYQFQSDRALPDLEKQAKDLEAE
RDSIIIEGEEDVEDYYDLLQQLKNCKNDVRDIVFSPKYCLPFLQPGRLVRVQCTPDDRTQ
SFSTEEHVTWGVIIDFERLKSPGGDKRPEDSDYTVVVLLKCMINKETGAKKPVKIVPLDE
KNGEPTIISLPLSEIDSLSSIRLFMPKDLLRPEARENTLSKVSEVLSRFSRDGIPLLDPV
QQSSSYKKSVRRVEDLERSIEKHVMRNTPLAPQKLKALHDKLELNARIKSIKKVTRSSTA
LAFKGELKARKRVLRRLGYITSDDVVQLKGKVACEISSADELTLTELMFSGAFKDVSVEG
MVALLSCFVWQEKLQDAQKPREELDLLFIQLQETARRVAAVQLECKIQIDVENFVNSFRP
DIMEAVYEWAKGSKFFEIMEMTQVFEGSLIRAIRRMEEVLQQLILVAKSIGETQLEAKFE
EAVAKIKRDIVFAASLYL
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctttaaagagaaaaaccctagaagaaccagcacctgatctcaaatcgccgcct
caaaagtctcaaaagggtaaagagaatgggaacgatgagccaattcgcgtcgacgagcct
gttgcttgtctccacgacgtctcatatcctgaaaactacgttcaacctcggtctcagtcg
aagccttcgatcgagaactcgaagccagcgaaggagtttccttttgagctcgatccattt
cagtctgaagctattaagtgccttgacagtcaagaatccgtcatgtatgctatcgccatg
tcattgagaaaccaacaaagggtcatctatacctctccaattaaagctcttagtaatcaa
aagtatagagaatttaaagaagaattctcagacgttggtcttatgactggtgatgtgact
atagaacccagtgcctcctgcttggtcatgacaacagagattttacgtagtatgcaatac
aaaggatcagaggttatgagggaggttgcttggattatctttgatgaagtacactacatg
cgcgatagggaaagaggtgttgtttgggaggaaagcattgttctggctcctaagaactca
cgttttgttttcctttctgcaacagttcctaacgcgaaggagtttgctgattgggtagca
aaggtacatcagcagccttgccacattgtttatacggattatcgacctacaccacttcag
cattacatttttccttctggaggtgatggcttatatttggtggtggatgaaagagggaaa
tttagggaggacaattttcaaaaagctttaaatgcacttgttccagctagtgaaggggat
aagaaaagggaaaatgggaagtggaaaaaaggtttactatcaggcaggcctagtgaagaa
agtgacatatttaaaatggtgaaaatgataatccagcgacaatacgatcctgtgataatt
ttcagtttcagcaaaagggactgtgagtttcttgcaatgcagatggcaaaattggactta
aatgaagaagatgagaaaataaatgttgaaaccatcttttggagcgcaatggacatgctt
tctgatgatgacaagaagcttccacaggtttcaaatatgctacccttgttgaaacgtggg
attggtgtacatcattctggtctgctgccaattttaaaggaagttattgagatactcttt
caggaagggctgatcaagtgtttgtttgccacagaaaccttcagtatcggtttgaacatg
cctgcaaagacggtagttttcacaaatgtgcgtaaatttgatggggataaatttagatgg
atatctagcggggagtatattcagatgagtggtcgtgctgggcgtcgaggtattgatcag
cgtggtatttgcattctcatggtagatgagaaaatggagccatctaccgccaaaatgatg
gtgaaaggaagtgctgattgtttaaatagtgctttccacctaagctacaatatgcttttg
aatcaaatgaggtgcgaagacggtgacccagaaaatcttctcagaaattccttttatcag
tttcaatcggatcgagcccttcctgatctagagaaacaagctaaggatttggaagctgag
agagattcgattattattgaaggagaggaagacgttgaagattattatgatctcctacag
caactcaagaattgtaaaaatgatgttcgagatattgtattttcccccaagtactgttta
ccattcttgcagcctggccggcttgtgcgtgtacaatgcactcctgatgatcgaacacaa
tctttctccacagaagagcatgttacatggggagtgataattgattttgagaggctgaaa
agcccaggtggagataaaagacctgaggattcagattatacagttgttgtcctgttaaaa
tgcatgataaacaaggaaacgggtgcaaagaagccagtgaagattgttccattagatgag
aagaatggggagcccaccatcatttctttgccactttctgagattgatagcctgagtagc
attcggcttttcatgccgaaggatcttttgcgaccggaagcacgagagaataccctgagc
aaggtttcagaagttctttctagattctccagagatggtataccacttttagatcccgtt
caacaaagtagctcatataaaaaatccgttcgaagagttgaggatctggagaggtcaatc
gaaaaacatgttatgcgaaataccccacttgctccccagaagttgaaagcattgcatgat
aagctagaattgaatgcaagaatcaagtcaataaagaaagtaacacgatcatccacagcg
ttagcctttaaaggtgaacttaaggcacggaaaagggttctccggagactgggatacatt
accagtgacgatgttgtgcagttgaaggggaaggttgcgtgtgagataagctcagctgat
gaattaactctgacagagctcatgtttagtggagcattcaaggatgtgagtgttgaaggg
atggtggctcttctttcctgttttgtgtggcaggagaaactccaggatgcccagaaaccg
agggaagagcttgatttgctatttatccagctacaggagacagcaaggagggttgctgct
gttcagcttgagtgcaagatccagattgatgtggagaattttgtgaactcatttcgccct
gacataatggaagctgtgtatgaatgggcaaaaggctccaagttcttcgagataatggag
atgacacaagtattcgagggaagcttaatcagagcaataagaagaatggaggaagtccta
caacaattgattttggttgcaaagtcaatcggagaaactcaacttgaagcaaaattcgaa
gaggccgtagccaagataaaacgtgatatagtcttcgctgcatctttgtatttgtaa
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