Asparagus officinalis (garden asparagus): 109826881
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Entry
109826881 CDS
T05243
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 30-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109826881
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aof03041
]
109826881
03009 Ribosome biogenesis [BR:
aof03009
]
109826881
Enzymes [BR:
aof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109826881
Spliceosome [BR:
aof03041
]
Complex A
U1 snRNP components
U1 related factors
109826881
Complex B
109826881
Ribosome biogenesis [BR:
aof03009
]
Eukaryotic type
Pre-60S particles
Helicases
109826881
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
109826881
NCBI-ProteinID:
XP_020249487
LinkDB
All DBs
Position
10:69934900..69950828
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AA seq
494 aa
AA seq
DB search
MALRRAPKFLAILAELEIILVLSLSSFIKNDPVGEVACRTRPIDRSRDEVAAYRRMRDIT
VEGRDVPKPIRFFTEANFPEYCLEAISKCGFVEPTPIQSQGWPMALKGRDLVGIAETGSG
KTLAYLLPALVHVNAQPRLAYGDGPIILILAPTRELAVQIQEEAKKFGSHSNVRSTCIYG
GAPKGPQIRDLKKGVEIVIATPGRLIDMLEACHTNLRRVTYLVLDEADRMLDMGFEPQIR
KIVSQIRPDRQTLYWSATWPREVESLARQFLHNPYKVTIGSPELKANQSINQIVEVMSDH
EKYPRLVKLLGELMDGSRILVFLETKRGCDQVTRQLRMDGWPALSIHGDKAQAERDWVLA
EFKSGNSPIMTATDVAARGLDVKDIKCVINYDFPSCLEDYVHRIGRTGRAGAKGTAFTFF
TLSNARYSKSLIKILQEAGQSVSPALAALARSSGTTGGSGVNFRSRGRGGGRGGFGNRVS
GSNTIPIARGGKRW
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atggcattgaggcgggctccaaagttcttggccattttggcagaactggagattatactc
gttctcagtctctcttccttcattaagaatgatccagtgggagaagttgcttgccgtacg
aggccgattgaccggagccgggatgaggtggcggcgtatcggaggatgcgggatattacg
gtcgagggccgggatgtgccgaagcccattaggtttttcaccgaggccaatttcccagag
tactgtcttgaggctatatcaaaatgtggatttgttgagccaacacctatccagtctcaa
ggatggcctatggctctgaagggaagagacttagttggtattgcggagactggttctgga
aaaacattggcatatcttttgccggcactggtgcatgtgaatgcgcagccacgattagct
tatggtgatggcccaatcatactgatcttagcacctactagggaattggccgtgcagata
caggaagaagcaaaaaaatttggttcacattcaaatgttagaagtacatgcatctatgga
ggagcaccaaaaggtccacagattcgtgatcttaaaaaaggggttgagattgtcatagca
acacctggtcggttgattgatatgttggaagcttgccatacaaatttacgcagagtaaca
tatctcgttttggatgaagccgaccgtatgctggacatgggatttgagccccagattcgg
aaaattgtctcacaaatacgccctgatagacagacattgtattggagtgccacatggccc
agagaggtcgagagtctggcaaggcagtttttgcacaatccgtacaaggtaaccattgga
tctcctgaactgaaagccaatcaatcaataaaccagattgtcgaagtcatgtcggaccat
gaaaagtatcccaggctggtgaagctgttgggggagttgatggatggcagcaggatattg
gtatttctcgagacaaagagaggatgtgaccaagtaactcgacagcttagaatggatgga
tggcctgctctctctattcatggtgataaagcgcaagcagaaagagattgggttctggca
gaatttaaaagtggcaacagtccaataatgactgccactgatgtagctgcacgtggtctt
gatgtgaaggacataaaatgtgtgatcaattatgatttcccatcatgccttgaggattat
gttcacaggattggacggactgggcgtgctggtgctaaaggaactgctttcaccttcttc
actctttcaaatgcaaggtattccaagagtctcatcaagattcttcaggaagctgggcag
agtgtcagtcctgcactggctgcattggctagatcatctggcaccacgggaggttccggt
gttaatttccgatcaaggggacgaggaggaggacgaggaggatttggcaatagggtatct
ggttccaatacaattccaattgcacgaggaggtaaaaggtggtaa
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