Asparagus officinalis (garden asparagus): 109827295
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Entry
109827295 CDS
T05243
Name
(RefSeq) DNA mismatch repair protein MSH7 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
109827295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aof03400
]
109827295
DNA repair and recombination proteins [BR:
aof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
109827295
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
AAA_29
YppG
Motif
Other DBs
NCBI-GeneID:
109827295
NCBI-ProteinID:
XP_020249881
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All DBs
Position
1:87832733..87869526
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AA seq
1079 aa
AA seq
DB search
MKSQKSILYFLQKPWPGKSSSGGLHCQEPPRPDPNPASDPDPDPDPDIRGTDTPPEKRQC
SFFRANSPANGGKKRSDSKFSSIMHKFKRDAGPGSVDMRKNNDHASLSSHLDFGEFDENE
SNVRKNTPGKDYSKTSMSMSNDAYSSDPPSFELCPDIMGPETPAMRPLVPRLKRVQEDCR
NAETVRESSSFGSRKKVKCTQDLATEKTSNVERYENSSKFEWLNPSTIRDAKGRRPDDLL
YDKRTLYIPPDALKKMSACQKQYWSVKCKYMDIVLFFKVGKFYELYEVDAEIGQKELDWK
MTISGVGNCRQVGISESGIAGAVQKLIARGYKVGRMEQLETSDQAKARGKSSVIERKLVH
VSTPSTTIDNNIGPYAVHLLALKEGVKNGSPIYGFAFLDYAALKFWVGSISDDGSFAGLG
ALLMQVSPREIVYESSGLSKEAHKALIKYASAGRTTMQLTPVMPSANFLGPEEVRNLIHS
KRFFTGSSSSWTSAFDCATYYDLTICALGGLLEHLSRLKLDDALRNGELLPYHVYKSCLR
MDGQTLVNLEIFSNNVDGGLAGTLLKHLDHCITSSGKRLLRRWICHPLKDIDKINDRLNI
VEGLVNQCGVVSIMSETLRRLPDLERLLGQVKATVGSSSMVLLPFVGEKILKQRIKAFGT
LVKGLRMGTDLLIILLKEDSRSLPILKVLNLPVLSELDELLKQFEVAVNDDFPQYQDHTI
EDSDAETLSVLVELFVAKSNEWSHVIEALNSVDVLQSFAVAAISSCGSTTRPVLLPVESR
STISCPESKGPILRIKGLWHPYAVVDNGNSLVPNDIYLGEGAAGSHPRALLLTGPNMGGK
STLLRATCLAVILAQVGCYVPCDECVLSPVDVIFTRLGATDRIMSGESTFFVECSETATI
LRHATQDSLVLLDELGRGTSTFDGYAIAYAVFRHLVETVRCRLLFATHYHPLTKEFASHP
RVNLQHMACALKDNGLVFLYKLASGPSPESYGLQVALMAGIPNQVVEAASKASQRMKAMI
GKNFKSSEGRSEFSSLHEEWLRTLLAVAKTEESCWDEDASDTLLCLWHEMRSYYGSSRK
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atgaagagccaaaaatcgatcctctacttcctccaaaaaccctggccgggaaagtccagc
tccggcggccttcactgccaggagccgcctcgtccggatccgaatccagcctccgatccc
gatcccgatcccgatcccgatatcagaggaaccgatacgcccccggaaaagcgccagtgc
tcgttctttcgggccaattctccggcgaacggcggcaaaaaacgctccgacagtaagttc
tccagcatcatgcacaagttcaagagggatgctggaccaggaagcgtcgatatgaggaaa
aataatgaccatgcatcccttagttctcaccttgattttggtgaatttgatgaaaatgaa
tcaaatgtgaggaaaaatacacctggcaaggattactcaaaaacttctatgtccatgtct
aatgatgcctatagcagtgatcctcccagttttgaactttgccctgatattatgggacca
gaaaccccagccatgcgcccacttgttccccgtttgaaacgcgtgcaagaggactgccgt
aatgcagaaactgtgcgcgagtcttcctcttttggttccagaaaaaaagtcaagtgtact
caagatttggcaacagaaaaaacatctaatgttgaaagatatgagaatagcagtaagttt
gagtggctcaatccttcaactattcgagacgcaaaaggaagacgacctgatgacctgctt
tacgacaaaagaactttatacatacccccagatgcattgaaaaaaatgtcagcgtgtcaa
aaacagtactggagtgtgaaatgcaaatatatggatattgtcctctttttcaaagtgggg
aaattctatgaactgtacgaggtagatgctgagattgggcagaaagagcttgattggaaa
atgactatcagtggcgttggcaactgcagacaggttggaatttctgaatctggaattgct
ggtgctgttcagaagttaattgctcgtgggtataaagttgggcgaatggagcaacttgag
acttcagatcaagctaaagcgagaggaaaaagttccgtaattgaaagaaaattggttcat
gtgtccactccatccaccacaattgacaataacattggaccatatgctgttcatcttctt
gcactaaaagagggggtgaagaatggttcccccatttatgggtttgctttcctcgattat
gctgctttaaagttttgggtgggttctatttctgatgatggttcgtttgctggtttgggg
gctttgctgatgcaagtttcaccaagggaaattgtttatgaaagctcagggctctccaaa
gaagctcataaggctctcataaaatatgcttcagccggtcgcacaacaatgcaactaact
cccgtgatgcctagtgcaaattttctgggtcctgaagaagttagaaatctgatacactct
aaaagattttttacagggtcttctagttcatggacttcggcatttgattgtgcaacctat
tatgatcttactatctgtgctctgggtggactgcttgaacatttaagtaggctaaagcta
gatgacgctttacggaatggggaacttttgccatatcatgtatataagagctgcctaagg
atggatgggcagacacttgtgaatcttgagatcttcagcaataatgttgatgggggtcta
gcaggaacattgctaaagcatcttgaccactgtataacttcatctggcaaacggctccta
aggaggtggatctgccatccactaaaagacattgataaaatcaatgatagacttaacatt
gtagaaggactggtgaatcaatgtggggtagtatccatcatgagtgagactttgcgtagg
cttccagatcttgagagattgttaggacaagttaaggctactgttgggtcttcttctatg
gttctgctacctttcgtgggagagaagatattgaaacaaaggatcaaagcatttgggact
cttgtaaagggtcttcgaatgggaacagacctactaattatcttactaaaagaggacagc
aggagtttgccaattttaaaagttctaaatcttccagtgctaagtgagcttgatgaactg
ctcaaacagtttgaggttgctgtcaatgatgatttcccccagtaccaggaccataccatt
gaagactcagatgctgaaacattatctgttcttgttgagctgtttgtggcaaagtctaat
gaatggtctcatgtgatcgaggcacttaatagcgtcgatgtgctacaatcctttgctgtc
gctgcaatttcttcatgtggctctacgactaggcctgttcttttaccagtagagtctcgt
tctacaatctcatgcccagagagtaaagggccaattctaaggattaagggtttgtggcac
ccctatgctgttgtagataatgggaacagtctggttcccaatgacatatatcttggtgaa
ggtgcagctgggtctcatccacgagcattgctactgactggaccgaatatgggtgggaaa
tcaacgttgctgagggccacatgtcttgctgttatactggctcaggtaggctgctatgtc
ccctgtgatgagtgtgtgctgtcaccagttgatgttatctttacgcggcttggggcaact
gatcgaatcatgtcaggagaaagcactttttttgttgagtgctcagaaacagcaacaatt
cttcggcatgctactcaagattctcttgtgttgcttgatgaactcggtagagggacgagc
acatttgatggttatgcaattgcatatgctgtatttcgtcatctggtagaaaccgttcgt
tgtcgcttgctctttgccactcactatcaccccctcaccaaagaattcgcatctcatcct
cgagtaaaccttcaacatatggcatgtgctcttaaagataacggcctagtttttctctac
aaacttgcatctggcccttcacctgagagctacggacttcaagttgctcttatggccgga
atccccaatcaggttgttgaggctgcatcaaaggctagccaaagaatgaaggcgatgatc
ggtaaaaatttcaagagtagtgaagggaggtctgagttttctagtcttcatgaagaatgg
ttgagaactttgttagcagttgcgaagactgaagaaagttgttgggatgaagatgcctct
gatactttgctttgcttatggcatgagatgaggagctactatggatcaagtagaaaatga
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