Asparagus officinalis (garden asparagus): 109827326
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Entry
109827326 CDS
T05243
Name
(RefSeq) cleavage stimulation factor subunit 77
KO
K14408
cleavage stimulation factor subunit 3
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109827326
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109827326
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
109827326
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
TPR_15
TPR_19
TPR_2
Iml2-TPR_39
TPR_16
Motif
Other DBs
NCBI-GeneID:
109827326
NCBI-ProteinID:
XP_020249906
LinkDB
All DBs
Position
Unknown
AA seq
762 aa
AA seq
DB search
MPEDSKQKGADSGDDHDIYNIEAAEILASEAQLLPISESAPIYEVFASFFLTAAKYWKQY
VEAYMALNNDEATKQIFSRCLLNCLQISLWQCYIRFIRKSNEKKGAEGLEETKKAFDFML
SYVGTDIASGPVWMEYIAFLKSMPVSTAQEESHRMTSVRKVYQRAIITPTHHVEQLWKDY
ENFENSVSRALAKGLLSEWQPKVNSARAVYRELKKYVDEIDWNMLAIPPTGSCKEEQQWM
AWKRYLAFEKANTQRIESAFANRRITFTYEQCLMYLYHYPDIWYDYATWHAKNGSLDSAA
KIFQRALKALPDSDLLKYAFAELEETRGAIQPAKKVYETLVGSDNTATSLAHIQFIRFLR
RTEGVEAARKYFLEARKAPSCTYHVFVAYAKMAFCLDKDSKVAHNVFEAGFKRFMHEPGY
ILEYADFLCRLNDDRNVRALFERALSLLPPEESEEIWKRFAQFEKAYGDLSSMLKVEERR
KEALSRTTSDDGSSLTECTLHDVISRYSFMDLWPCSSKDLDHLSRQEWLAKNNKKKVDRS
TLINGTSALDKGSSELLNTKAGLSSSKVIYPDTSRMIIYDPRQTNDVTAPEVPAISNPSN
SAAGLALVSCGNTKAVEEILKSMSPALAAFVTNLPAVEGPTPDVDLVLSILLQSNIPTGQ
VGKPGSTQQAAAGTAPSTSDLSGSSRSRLNPNGSLHRPQSGKRKDLNRQEDDETSTIQSR
PLPRDVFRMRQIQRARGVSNSQTGSAASGGSAFSGDQSVSTD
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaggactccaaacagaaaggggcggactctggtgatgatcatgatatctacaac
atcgaagctgctgagattctcgcgagcgaagcccagcttcttcctatatcggagtccgcg
ccgatttatgaggtgtttgcttcattttttttaactgcagcaaaatactggaaacagtat
gtggaggcgtacatggctctaaacaacgatgaggctacaaagcaaatattcagtcggtgt
ttactgaattgccttcaaatctctctttggcaatgttacatccgcttcattaggaaaagc
aatgaaaagaaaggagctgaaggtttggaggaaacaaagaaagcttttgattttatgctg
agctatgttggcactgacattgcatcaggacctgtatggatggaatacattgcctttctg
aagtcaatgccggtttcgactgctcaagaagagtcgcacaggatgacatctgtaaggaaa
gtgtaccaaagagcaattattactccaacccatcatgtcgagcagctatggaaagactat
gagaattttgagaactcagttagtcgtgctctggcaaaaggtttattatctgaatggcaa
cccaaagttaatagtgcgagggctgtttacagagaactgaaaaaatatgtagatgaaatt
gactggaatatgctggccattccaccaacaggatcctgcaaggaggagcagcaatggatg
gcatggaagagatatttggcctttgaaaaagctaacacgcaaaggattgaaagtgcattc
gccaatagacgcattaccttcacctatgagcagtgtttgatgtacctctaccattaccct
gatatatggtatgattatgctacgtggcatgcaaagaatgggtctctggattctgcagcc
aaaatttttcagcgtgctttaaaggctcttcctgattccgatttgttgaagtatgctttt
gcggaattggaggaaacacggggtgcaattcagcctgccaagaaagtatatgaaactctt
gttggtagcgacaacactgcaacatcacttgcacacattcagtttattcggtttttgaga
agaaccgaaggcgtcgaagctgctcgcaaatacttcttagaagctcgaaaggcaccaagc
tgcacgtatcatgtatttgttgcttatgctaagatggcattttgtctcgacaaagattca
aaggttgcacacaatgtttttgaagcaggattcaaaagattcatgcatgagcctggttac
atccttgagtatgcagattttctttgccgtttaaatgatgataggaatgttcgtgcttta
tttgaacgagccttaagcttgcttcctccagaagaatctgaagagatatggaaacggttt
gcacagtttgagaaggcgtatggagatttgtcaagcatgttaaaggtcgaagaaaggcgg
aaggaagctctgtctaggacaacaagtgatgatggttcgtccttaacagagtgtacattg
cacgatgtaatttcacgttacagtttcatggatctttggccctgctcgtctaaggatttg
gatcatttgtcaagacaagagtggcttgcaaaaaacaataagaagaaagttgacaggtca
actctaataaatgggaccagtgccctcgacaaaggatcctctgaactgttgaacacaaag
gcaggcctttcttcttcaaaagtcatttacccagatacttctaggatgatcatatacgac
cctagacagacaaatgatgtgacagcacctgaggtcccagcgatttccaaccctagtaat
tctgctgctggtcttgctttagttagctgcggaaacacgaaggctgttgaggagatcttg
aaatcgatgtcgccagcattagcagcttttgttacaaatttgccagcagttgaaggccca
accccagatgtggatttggtgctgtctattttgctgcagagtaacataccaactgggcag
gttggaaaaccaggttctactcagcaagcagcagctggtactgctcccagtacgagtgac
ctttcaggttctagcaggagccggctaaatccaaatggatcattacatagacctcaatct
ggaaaaagaaaagatctaaacaggcaagaagatgatgaaacctcgacaatacagagccga
ccgctacccagagacgtatttagaatgaggcagattcagagggctcgaggtgtcagtaac
tcacaaacgggatctgcagcctctggtggaagcgcattctccggtgaccaatccgttagc
accgattaa
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