Asparagus officinalis (garden asparagus): 109827408
Help
Entry
109827408 CDS
T05243
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03020
RNA polymerase
aof03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
109827408
09124 Replication and repair
03420 Nucleotide excision repair
109827408
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aof03021
]
109827408
03400 DNA repair and recombination proteins [BR:
aof03400
]
109827408
Enzymes [BR:
aof01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
109827408
Transcription machinery [BR:
aof03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
109827408
DNA repair and recombination proteins [BR:
aof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
109827408
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF7069
Motif
Other DBs
NCBI-GeneID:
109827408
NCBI-ProteinID:
XP_020250011
LinkDB
All DBs
Position
Unknown
AA seq
1843 aa
AA seq
DB search
MDMRFPFSPAEVAKVRTVQFGILSPDEIRQMSVVQVEHGETMERGKPKVAGLSDPRLGTI
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLAIMRCVCFNCSKILADEDDVR
FKQALKIRNPKNRLKRIYDACKSKKKCAGGDDIDVQGQQDSDEPVKKSRGGCGAQQPNIT
IDGMKMVAEYKATKKKSDDPEQLPEPVERKQQLSAERVLSVLKRISDEDCLLLGLNPKYA
RPDWMILQVLPIPPPPVRPSVMMDTSARSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
REDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD
TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI
NLSRASAWHSESETGFITPGDTQVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDA
ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNDVKDLIKLAQDKQ
LEPEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
TACVGQQNVEGKRIPYGFIGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
KLDSLKMKKKEFNNVYRYEIDDNQWDPSYMLPEHVEDLKTIPEFRNVFDAEVQKLEADRF
QLGTDIATTGDNTWPMPVNLKRLIWNAQKTFKVDPRRPSDMHPMEIVEAVDKLQEKLRVV
PGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAP
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFL
KPEISKKKELAKNVQCALEYTTLRSVTHATEVWYDPNPMSTIIEEDVDFVNSYYEMPDEE
VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLTCIFNDDNAEKLILRIRI
MNDDAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNRFDENEGFK
PDVEWTLDTEGVNLLAVMCHEDVDPTRTTSNHLIEVIEVLGIEAVRKSLLDELRVVISFD
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAEAD
HLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYMEGLDFGMTPARSPISGT
PYHEGIMSPSYLLSPNIRSSPFTDAQFSPYVNNMPFSPGVSPGYSPSSPGYSPSSPGYSP
TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPVYSPTSPAYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPASAKY
SPSLAYSPSSPNISPSSPYSSSSPNYSPTSPTFSPTSPSHSPPSPTYSPTSPYNSSGVSP
VYSPSSPQYSPSASYSPTAPGYSPSSTSQYTPQMSNKDDGSTR
NT seq
5532 nt
NT seq
+upstream
nt +downstream
nt
atggacatgcgattcccgttctctccggccgaggtggccaaggtccgcaccgtccagttc
ggaatcctcagccccgacgagatcaggcaaatgtcggtggtccaagtggagcacggcgag
accatggagaggggaaaacctaaggtcgccggtctcagcgatccgaggctcggcacgatc
gatcgcaagatgaagtgcgagacttgcacagcgaacatggccgagtgtcctggtcacttt
ggccacctcgagctcgcaaagcccatgtttcatattggattcatgaagactgtgctcgct
atcatgcgctgcgtttgcttcaattgctccaagattctcgccgacgaggacgatgtccgg
tttaagcaggcactgaaaattagaaacccgaagaacaggctgaagaggatttatgatgcc
tgtaaaagcaagaaaaaatgtgcaggcggggatgatatcgatgttcaaggtcaacaggat
tcagatgaaccagtaaagaagagccgaggcggttgtggtgctcagcagccaaatattact
attgatggtatgaaaatggtcgcggagtacaaagctacgaagaagaaatctgatgaccca
gaacagcttcctgaacctgttgagagaaaacaacagctttctgcagagagggttctcagt
gttcttaagaggataagcgatgaagattgcctcctactaggtttgaacccgaaatatgct
cgtccagattggatgatattacaagttcttcctattccaccaccacctgtaagaccatct
gttatgatggacacctctgctagaagtgaggatgatttgactcatcagctagcaatgata
atcagacacaatgaaaacttgagacgtcaagagaggaacggagctcctgctcacatcatt
acagagtttgcccagttattgcaatttcatattgcaacttattttgataatgagcttcct
ggacagccaagggctacacagcggtctggacgacctatcaagtctatatgcagtagactt
aaagcaaaagaaggtcggattagagggaacttgatgggaaagcgtgttgatttttcagca
cgaacagttatcacccctgatccaacaattaatattgatgaactgggtgtgccttggagc
attgccttaaatctgacgtacccagaaactgtgactccgtataacattgaacgattgaag
gaacttgtagaatatggccctcatcctcccccaggtaagactggtgcaaagtacataatc
agggaagacggtcagaggcttgatcttcgttacctcaaaaaaagcagtgatcatcatctc
gagcttgggtacaaggtagagaggcatttaaacgacggggactttgttcttttcaacaga
caaccaagtcttcataaaatgtccattatgggacacaggataaaaatcatgccatattca
acttttcgcttaaatttatcagttacttccccatacaatgctgattttgatggtgatgag
atgaacatgcacgttcctcagtcctttgaaactagagctgaagttttggagctgatgatg
gttcccaaatgcattgtatcacctcagtcaaatcggcctgttatgggcattgtccaggat
acactcttaggatgtcggaagatcaccaagagagacacctttattgagaaggatgtattt
atgaatattttgatgtggtgggaagactttgatgggaaggtgcctgccccagccattttg
aagcctagacctctgtggacagggaagcaagtgtttaatcttatcataccgaagcagata
aacctttccagagcttcagcatggcactctgaatctgaaacaggatttatcacacccgga
gatacgcaagtcagaatagagaaaggagagctgcttacaggaactctgtgcaagaaaacc
cttggaacctctactggaagtcttattcatgttatttgggaagaggttggtcctgatgct
gctcgcaagtttctagggcatacccagtggcttgtgaattattggcttttacaaaatgcc
tttagcattggtattggggacacaattgcagatgcagctactatggaaaaaattaatgaa
acaatctcaaaggccaaaaatgacgtgaaggatcttattaagctggcccaagacaagcaa
ttagagcctgagcctggcagaactatgatggagtcatttgagaataaagtgaaccaggtc
ttgaataaagctcgtgatgatgctgggagtagtgcacagaagagtttatctgaaagtaac
aacttaaaggcaatggtcactgctggatcaaagggaagtttcatcaacatatcacagatg
actgcttgtgtgggacaacagaatgttgagggcaaacgtatcccttatggtttcatcggt
cgaacattaccccacttcacaaaagatgattatggacctgaaagtcgtggctttgtcgag
aactcctatctccgtggtttgactccacaggagttcttctttcatgcaatgggaggtaga
gaaggtttaattgatactgctgtcaaaacctctgaaactggatatattcagagacgtctt
gtgaaggctatggaggatatcatggtcaaatatgatggcaccgttcggaattcactggga
gatgtcattcagttcctttatggagaagatgggatggatgctgtttggattgagtcacaa
aagttggattctctgaagatgaaaaagaaagagttcaataatgtttataggtacgaaatt
gatgataatcaatgggacccaagttacatgctaccagagcatgttgaggatttgaaaaca
attcctgaattcaggaatgtgtttgatgccgaggtccagaaattagaagctgaccgattt
cagcttgggactgacattgccaccactggtgataacacatggcctatgcctgtgaacctc
aagagactcatctggaatgcacagaagacattcaaagtcgatccaagaagaccatctgat
atgcaccctatggagatagtagaagctgttgataagcttcaggaaaagctgagagttgtc
ccaggtgatgattttctgagtatggaggctcagaaaaatgccactttgttgttcaacata
ttactccggagtacatttgctagtaagagagtactgaaggaataccgacttacccgtgaa
gcatttgaatgggttattggtgaaatagaatctcgctttttgcagtctctggtagcaccg
ggtgaaatgattggctgtgtagctgctcagtctattggggaaccagcaactcaaatgacc
ctaaacacattccattatgctggtgtgagtgccaagaatgttactctaggtgttcccagg
ttgagggaaattataaatgttgctaagaaaatcaaaaccccttcactctctgtcttcttg
aagcctgaaatcagcaagaagaaagaattggctaagaacgtgcagtgtgccttggaatat
actactttgcgtagtgtaacacatgcaactgaagtatggtatgatcctaatcctatgagc
actataattgaggaggatgttgactttgttaactcatactatgaaatgcctgatgaagaa
gttgctccggaaaagatatctccatggctgctccgtattgaactaaatagagagatgatg
gtagacaaaaagctgagcatggcagacatcgcagagaagattaaccatgagtttgatgat
gatcttacatgcatctttaacgatgacaatgctgagaaactcatccttcgtatccgtatc
atgaatgatgatgcccctaagggagaactgcaagatgaatctgctgaggatgatgtcttc
ctcaagaagatagaaagcaacatgcttacagaaatggctcttcggggaatccctgatata
aacaaggtctttatcaagtctgggaaagtaaatagatttgatgaaaatgaagggtttaaa
cctgatgtagagtggacacttgatactgaaggtgtcaatttgctggcagtcatgtgccat
gaagatgtggatccaaccaggacaactagcaaccacctgattgaagttatcgaagttctt
ggaattgaagctgtccgtaaatcactccttgatgagttgcgggtggtcatatcttttgat
gggtcttacgtgaactatcgtcacttggctattttgtgtgacactatgacttatcgaggt
cacttaatggccatcaccaggcacggtattaatcgcaatgacactggcccaatgatgaga
tgttcatttgaggaaactgtggatattctcctggatgcagctgtttatgctgaggcggat
catctcagaggtgttacagagaatatcatgttaggtcaacttgcaccaattggaacaggg
ggctgtgctttgtatttgaatgatcaaatgctgcaacaagctattgagctacagctaccc
agttacatggagggtttggattttgggatgacacctgcccgttcacctatctcagggaca
ccatatcatgaaggaattatgtcaccaagctatttgttgagtccaaatatccggtcttca
ccgttcacagatgctcagttttctccatatgttaataacatgcctttctctcccggtgtt
tcaccgggttatagcccatcgtctcctggatatagtccatcatcgccgggatatagccca
acttcacctggttatagccccacatctccaggatacagtccaacatctcctggttatagc
cccacgtctccaacttatagtcctagctctccagggtatagtccaactagccctgcttat
tctcctacaagtccttcatactcacccacctcgcccagctacagccctacctctccaagc
tacagtcctacatctcccagttacagccctacctctcccagttatagtcctacttcacca
agttacagtccgacttcacctagttacagtccaacatccccagtttatagtcccacttct
cctgtttatagcccgacgtctcctgcttacagtccaacatcaccatcctatagtcctacc
tctccttcttatagcccaacatcaccgtcatacagtccaacttctccttcatatagtcct
acatcgcctgcttatagccccacttctcctggttatagtccaacttctccaagttatagt
cccacttctccaagttacagccctacatctccgagctacaatccagcttctgccaagtat
agcccttctcttgcgtattccccaagcagtccgaatatttcaccatccagcccatacagc
tcaagttctccgaattatagcccaacttcaccaaccttttctccaacctctccctcccat
tcgcctccgagtcccacatatagtcctacaagtccatataactcttctggtgtgagccca
gtttacagcccgagctctccacagtacagcccaagtgcgagttactcaccaactgcacca
ggatattctccatcctcgaccagtcaatacacaccacaaatgagcaacaaagatgatgga
agcactcgatga
DBGET
integrated database retrieval system
