Asparagus officinalis (garden asparagus): 109827450
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Entry
109827450 CDS
T05243
Name
(RefSeq) uncharacterized protein LOC109827450
KO
K19026
spatacsin
Organism
aof
Asparagus officinalis (garden asparagus)
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aof03400
]
109827450
DNA repair and recombination proteins [BR:
aof03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
109827450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
109827450
NCBI-ProteinID:
XP_020250048
LinkDB
All DBs
Position
1:88760745..88827414
Genome browser
AA seq
3274 aa
AA seq
DB search
MSSWGGIGDGPAILQLQKWGHLKSQLEPSKYCLASLSPTRELLLLLSYECEALLLPLTFD
APGKSSSENLHEPNSPEPSSTCRSESIDSARCSTKAGVPVKNILFRNRGSSSSSQYPPVI
SGVKSLAWGHCGDVYNQFEDSVFKEFLIVSSDNGIIVHAFRYQHRNEVFQSVPEGDSVEG
KWVEWGPTNNSVTKSKFSHSSTGESPNEPKIIETSGTVDVCDAVDDGGSSGRSILPKNWF
QTFHMELDTVVSNGKYSARFPAKSSIPLSADVVSLDIGDNTSKFIEFFSSSTLYGEKENI
SDGPVVGQVGDPSLSDRSSKGSVKAGGDIIYRCSRVFNNSSHRLIGLVLNFPEDVSDKNS
EFHVRNTGKDFVVVMMLNQWGLQWICSVDLQHHDPSSFPSLEWADFQFSNDFLICLNSSG
LICIWNVLSGGLVTHFDVLKSCGLDRSACFRLSQSEPPVNRHLASTKSNFSQEVDKKIEV
SGRETCGDEIVCARTFRRLMVISHSFLLAVVDDHGVIYVIRAAEYVSKKCATFENFVHSY
KYSDSSMLAGWKVADCEIDCAKILSDLSTDGFSNKNHSGATKFRKRHHHTDGKEIHKFRK
RHHHTNGNESESCTYSSGFSTSQINGRKVFALESEISSTPLRKVFLPLDRFNKEDCICFS
PIGITRFVRRLNMKQQKVHKIVHTSLHVVSPVLDDIDLGTYCSSKSFSSSREVAFSGESI
GFSFQGCLYLVTEDGLSVILPSISISSSILPAEFTRYWQPTFTAGSKSQIKTFLAIDEMK
ELGRPWQIEVLDRTLLYEGPDEAERISLENGWDLRMARIRRMQLALHYLKADEIEKSLDM
LVDVNLAEEGILHLLFTSIYRIFCKAASDSEVALASRLLALAASFATKMVRRYGLGEHKK
EKFLYDAKELQISYAKPLERKNNLDEIGNSRRLSEMAQFLEVIRNIQAQLSLKGRKLGKS
MAGGMDAAIVTDIDVSQDDPLLPSSSIDAVSHGLLNTSEARVNLPLTATEVAFDNSKTIA
LSPLESAVGEVNMNKFPEAGIVQNRTVSMEIPSIMIARWAIDNIDVKAMVKDALDSGHLP
LAVLQLHLLQQKELVSREDSPDTFSEIREIGRAIAYDLFLKGESGLAVETLLKLGEDVEV
ILRELLFSTVRRSLRKQITEEMNKNENLRPHEWKILERIFLIERLYPSFSFWETFLERQK
DVFGDASVFTLPGANGLKLNFHVHDNLILECGDIDGAVTGSWATVAGGSPEVCEASPRAG
YWVCAAIWSYAWDQRTVDRIVLDQPLHVEVHVAWESQLEYHMCRSNWEQVCKLLDAIPTS
LLSEGSLEINLNSSQISTNTETCSKFPDHAMYICAAEELEPVCMDIPDVKIFTSPVVNTC
SSWLKMLVELELARKFIFLKDYWENTTDIIPLLARAGLTIDKCRIVNEPTMSSLDLAVLD
TGRRPHKDAGKALHKLVVSHCTQYNLPNLLDLYLDHCNLDLDDDLLSPLLDAAGDCQWAK
WLLFSRNKRHVYEASLSNARSNLSRRMIHGSNLSVLEFDEIIHTVDDMAEGGGEMAALAT
LMYAASPMQKCLCAGSVNRQCSFTPQCTLENLRPGLQHFPTLWRTLVNACFGQDDNACSL
NSDAVNVFGKSLLSDYLGWRDTIFCSTGGDTSLIQMLPCWFSKSVRRLVTLFVQGPLGWQ
SLSGAVPTGESSFYGESSYVIHATGNAGVTPINWEAAIQKSVEELYSSVEDKGFGVEHHL
HRGRALAAFNHILGLRVSKLKSAHTQRGLSGQTNIQSDMQAILAPLSQSEGSLLSSVVPL
AITHFEDSVLVASCAFLLELCGLSATLLRVDVAVLQRISSYYNSVRQNPHYGHVSPRESA
LHAASQEGDTILSLAQALADNYLHHDHAHILDQRHVSHEVLKGGQPPRSLMTVLQHLEKA
SLPLIDEGKTCGNWLSSGNGDGYEFRAQQKDASMRWNLVTEFCHMHRLPLSTKYLSLLAN
DNDWVGFLTEAQMGGFSTDVIIEVAAKEFSDPRLRIHILTVLKSMQSARKKTNSSTMNGL
TSGNNEMPCIPGSNSVVSVELFGILAECERQKNPGEALLTKAKDLSWSLLAMIASCFSDV
SALSCLMVWLEITAARETSSIKVNDISSKIASSVGAAVEATNKLPSGSRSLMFRYNRRKP
KRRCLMEPASGDSPDGLMEPASGDSPDCLIEPASGDSLDGSFNIPSRSRSAVASISQEVG
SEETNEMCTEKSKLSVDSDEGLASLSNMIAVLCGQHLFLPLLRAFEMFLPSCSLLPFAFS
QMRLSEASAHLASFSARIKEEPFLHMNVARNGSVKTSWISSTAVKAAEAMLSTCSSPYEK
RCLLQILAAADFGDAGAASAYFHRLCWKISLAEPSLRKDEDAYLGNEVLHDASLLAALEM
NGRWEHARSWARQLEISGASWKDAVHHVTEAQAEAMVVEWKEYLWDVREERAALWGHCQT
LFLRYSFPPLKAGLFFLRHAEAIEKEIPARELHEMLLLSLQWLSGSMTKSPPVYPLHLLR
EIETRVWLLAVESEVQSKPEGDLILSNSIHNIVTGTSASIIEQTANVIAKMDAHINTMRL
RASERNAMRENNLPHSRHLQFGDSHSSVTTASSTRTKRRSKTYLQIRRPTETIENSNDSD
DNLNSPNNILSSGEVSKNTQITEENMQIEASVSGWEEKVRPAEVERAILSLLEFGQITAA
KQLQLKLSPSYVPPELVFVDAALKVADLSSPNSSGEINLSELDHEVLSVVQSLPAVSKDH
ADLLQVLESLAAKCSQGCGRGLCWRIISVVKSAKVLGLTFSEAFEKRPIELLQLLSLKAQ
ESLEEAKLLVQTHVMSAPSIARILAESFLKGLLAAHRGGYMDSQREEGPAPLLWRFSDFL
KWAELCPSEPEIGHALMRLVMTGQEIPHACEVELLILSHHFYKSSACLDGVDVLVTLAAN
RVESYVSEGDFSCLARLITGVSNFHALNFILNILIENGQLDLLLQKYSTADTGSATSEAV
RGFRLSVLTSLKLFNPHDLDAFATVYNHFDMKHETASHLEFRSTQFIHQWFSRRYRDRQT
EDLLEAMRYIIESAEVYSTIDAGHKTYRACARASLLSLQIRIPDLNYLELTETNARRALV
EQSRFQEALIVAEAYDLNQPSEWAPVLWNLMLKPDLIEEFVAEFVTVLPLQPSMLLELAR
FYRSEVAARGDQSHFSVWLSPGGLPAEWVKHLGRSFRCLLKRTRDLRVRLQLATIATGFG
DVVDSCTKVLDKVPESAGPLILRRGHGGAYLPLM
NT seq
9825 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttggggtggaattggagacggtcctgccatcttgcaattgcaaaaatggggc
cacttgaagtctcaacttgaaccatcaaaatattgtctagcttctctgtccccaactaga
gagctgctgctgctgctttcgtatgagtgtgaagccctattacttcctctgacttttgat
gccccaggtaagtcctcttctgaaaatcttcatgaaccaaattctccagaaccatcgagc
acatgcaggtcagaatctattgatagtgctcggtgcagtacaaaagctggcgttcccgta
aaaaatattctttttcgaaatcgaggcagctcttcctcatctcagtatcctcctgtgatc
tctggtgtgaagtcattggcttggggacattgtggagatgtgtataatcagtttgaggat
tcagtttttaaagaatttctcattgtatccagcgataacggaattatagttcatgctttt
cgttatcagcatagaaatgaagtgtttcaatctgtaccagaaggtgactctgtggagggt
aagtgggtggaatggggacctactaataactcagtgacgaaatcgaagttctcacattca
agcactggtgaaagcccaaacgaacccaagattattgaaacatctggaactgtagatgtc
tgcgatgcagttgatgatggtggttcatctggtagaagtattttaccgaaaaattggttc
cagactttccatatggagctggataccgttgtgtctaatggtaagtattcagctaggttt
cctgcgaagtcatcaattcctctttctgcagatgttgtatcattagacattggtgacaat
acttcaaaattcatagagttcttttcttcttctactctatatggtgaaaaggagaatata
agtgatggacctgtggttggacaagtgggtgatccatctctttctgataggtcatctaaa
ggttcagtaaaggctggtggagatattatatataggtgttcgagggtgtttaacaactcc
tcacatagattgattggtttagtattgaatttcccagaagatgtatctgataagaatagt
gaattccatgtaagaaatactggcaaggattttgtggttgttatgatgctgaatcagtgg
ggtttgcagtggatttgttctgtagaccttcagcatcatgatcccagttcgtttccaagt
ttagaatgggcagatttccagttttccaatgactttcttatctgtcttaactcctcaggg
ctaatctgtatctggaatgttctgtctggtggccttgttacgcattttgatgttttgaaa
agctgtggactggacagaagtgcttgttttaggttaagtcaatcagaaccgcctgtaaat
agacatttagcttccacaaaatcaaacttcagtcaggaagttgataaaaaaattgaagtt
agtggaagagaaacatgcggtgacgagattgtatgtgctagaactttcagaaggttgatg
gtgatctcacattctttccttcttgctgttgtggatgatcatggagttatctacgtaatc
agggctgctgaatatgtctcaaaaaaatgtgctacatttgaaaattttgttcattcctat
aaatactctgatagtagcatgttggcaggttggaaggttgctgattgtgaaatagattgt
gcgaaaattctttcggatctgtcaaccgacgggttttcaaataaaaatcactcaggtgct
actaaatttaggaaaagacatcaccatactgatggcaaagaaatccataaattcaggaaa
agacaccaccatactaatggtaatgaaagcgaatcatgtacctattcaagtggtttttct
acttctcagataaatggtaggaaagtgtttgctcttgaatctgagatctcatcaactcct
ttgcgcaaagttttccttcctttggacagatttaacaaagaggattgtatttgcttttca
cccattggaattactcgattcgttagaagactcaatatgaaacaacaaaaggtacataaa
attgtacacactagtttacatgtggtttcaccagtccttgatgatatagatctgggtaca
tactgctcttctaaaagcttttcttcctcccgagaagttgctttctctggggaatcaatt
ggattctcttttcaaggctgcttgtatttagtgaccgaagatggcctttctgtcattctc
ccatcaatttcgatttcatccagtattcttcctgcagaattcaccagatactggcaacca
acttttaccgcaggcagcaaaagtcagattaaaacttttttggctatagatgaaatgaaa
gagctgggaaggccttggcaaatagaggttttggacagaactcttttatatgaaggccct
gatgaagctgaacgaatttctttggagaatggatgggacttgagaatggctcggatccgt
cgcatgcaattggcactacactatttaaaagctgatgaaatagagaaatctttggatatg
cttgtggatgtgaatctggctgaagaaggcatattgcatttgctttttacctctatttat
cggattttctgtaaagctgcaagtgacagtgaagtggctttggcatctaggctgctggct
cttgctgcctcctttgcaacaaaaatggttcgaagatatggattaggagagcataaaaag
gaaaaattcctatatgatgctaaggagttacaaatatcttatgcaaagccacttgagaga
aagaacaatcttgatgaaattggcaactcaaggagactatctgagatggctcaattcttg
gaggttattagaaatatccaagcccagctgagtttgaaaggtcgtaagctgggtaaatcg
atggcaggaggtatggatgcagcaattgtgacagatatagatgtgtcgcaagatgatcca
ctccttccatcttcttccattgatgctgtttcacatgggctgctaaatacctcagaagct
cgggttaacttacccttgacagctactgaagtggcatttgataactccaaaacaattgca
ttatcgccgctagaatctgctgttggtgaggtaaatatgaataagtttcccgaggcaggt
attgtgcagaatagaacagtttcaatggaaatccccagtattatgattgcacgctgggca
atagataacattgacgtaaaagcaatggtgaaagatgccttagactcaggtcatctccca
ttggcggttcttcaattgcaccttctgcagcagaaagaactagtatctagggaagattct
cctgatactttcagtgaaattcgcgagattgggagagcaattgcttatgacctgtttctg
aagggggaaagtggactagctgtggagaccctgttgaaacttggagaagatgttgaagtc
atccttagggaattgttgttcagtacagtgagaaggtcacttcggaaacaaattactgag
gaaatgaataagaacgaaaacctgagacctcacgagtggaaaatattggagcgaattttt
cttattgagaggctatatccaagttttagtttctgggagacatttcttgaaaggcagaaa
gatgtttttggagatgcttcagtctttaccttgcctggtgcgaacggtttgaagttgaat
tttcatgtccacgacaatcttatcctcgaatgtggtgatattgatggagctgttactggt
tcttgggccactgtggctggtggctctcctgaagtttgtgaagctagtcctcgcgctggg
tactgggtttgtgctgctatatggtcttatgcttgggaccaacgaactgtggaccgtata
gtgctcgatcagcctttgcatgttgaagttcatgtcgcatgggaatcccaacttgaatat
catatgtgtcgcagtaattgggaacaggtctgcaaactcttggatgcgattccgacatct
ctgttatcagagggcagtcttgaaattaatctgaacagttcacaaatttcgacaaataca
gaaacttgttccaagtttcctgatcatgcaatgtatatttgcgctgctgaagagctagag
cctgtgtgcatggatatccctgatgttaagattttcacatctccagtggtaaatacatgt
tcatcatggttgaaaatgctcgtagagctggaactggccaggaaatttatctttctaaaa
gactattgggagaatactacagatatcatacctctccttgctcgtgcaggcttgaccatt
gataagtgtagaattgttaacgaaccaactatgagctctcttgatctagctgttttggac
actggtaggagacctcacaaagatgcaggaaaagcattgcataagcttgttgtaagtcat
tgtacacaatataacttgccaaatctgctggacctttatcttgatcattgcaatttggac
ctggacgatgatttgctttctcctctcctggatgctgctggagattgccaatgggcaaaa
tggttacttttttcaaggaacaagaggcatgtgtatgaggcttcattgtctaatgctcgt
tcaaatttgtctcgtcgaatgatccatggtagcaatcttagtgtcttggaatttgatgaa
ataatacatacggttgatgatatggctgaagggggaggagaaatggctgctttggctacc
ttgatgtatgccgcttccccaatgcagaagtgtctttgtgccggaagtgtaaacaggcaa
tgtagttttactcctcagtgcactttggaaaatcttcgacctggtctccagcactttcct
acactctggaggacacttgtcaatgcttgttttgggcaagatgataatgcttgtagtttg
aattctgacgctgttaatgtatttgggaagtcattgctctctgactatttgggttggcgc
gataccatattttgctctactggaggtgacacttctttaatccaaatgcttccatgctgg
ttttcgaagtctgttagaagattggttaccctctttgtccagggtcctctgggatggcaa
tctctatctggtgcagtacctactggagaatcgtctttttatggagaaagcagttatgtc
atacatgcgactggaaatgctggggttactcctataaattgggaagcagctattcagaaa
agtgttgaggagctttattcttcagttgaggataagggatttggagtggagcatcacttg
catcgagggcgggcactagctgctttcaaccatattcttggtttacgggtttcaaaacta
aaatctgcccatactcaaaggggcctatctgggcaaactaacatacagtcagatatgcaa
gcaattcttgcacctttgagtcaaagtgaaggatcacttctgtcatctgttgtgccactt
gctattacacactttgaggattctgtattggttgcgtcatgtgctttccttttggagctt
tgtggattgtctgctaccttgctccgtgttgatgtggcagtcctacagcgtatttcttcg
tattataattcagttaggcagaatccgcattatggacatgtttcacctagggaatctgca
cttcatgcagcatcccaggaaggtgatactattctttcacttgcgcaagcattagcagat
aattatctccaccatgatcatgcccatattttggatcagagacatgtttcacatgaagtt
ttaaaagggggacagcctccacgttctctcatgactgtcttacaacatttggagaaagca
agcttgccactgattgatgaaggcaaaacttgtggtaactggctttcaagcggcaatggt
gatggttatgaattccgagctcagcaaaaggatgcaagcatgaggtggaacctggtcaca
gaattttgccatatgcatcgtcttcctttgagtacaaagtatctgtctctgcttgcaaat
gacaatgactgggttgggtttctgacagaagctcagatgggaggtttctcaactgatgtt
atcattgaagtggcagctaaggagttcagtgatccacgactcaggattcatatattaact
gtcctgaaaagcatgcaatcagctaggaaaaaaacgaactcttcaacaatgaatgggttg
acttcaggaaataatgaaatgccttgcatcccaggtagcaatagtgttgtttctgtggag
ctttttggaatccttgctgaatgcgagaggcagaaaaatcctggtgaagcccttctgacg
aaagcaaaagatctaagctggtctctattggcaatgattgcttcatgcttctcagatgtg
tctgcactttcatgcttgatggtttggcttgaaataacggcagcaagggagacatcatct
atcaaggtgaacgacatttcttccaaaattgcaagcagtgttggtgctgctgtagaggcc
accaataaattaccaagtggaagcagaagccttatgtttcgctataatcgtagaaaacca
aagcgaaggtgtctcatggagcctgcatcaggggattccccagatggtctcatggagcct
gcatcaggggattccccagattgtctcattgagcctgcatcaggggattccctagatgga
tcctttaatatccctagcaggtcaagatctgctgtggcatcaatttctcaagaagttggt
tctgaggaaacaaatgaaatgtgtactgaaaagtccaaactgtctgttgattctgatgaa
ggactcgcttctctttcaaacatgatagcggttctatgtggacagcacctatttcttccc
ctgttaagagctttcgaaatgttcctgccatcttgttcccttctgccctttgcattttct
caaatgcgactgtccgaagcttcggcgcaccttgcatcattttcagctagaataaaggaa
gaaccgtttttgcatatgaatgttgcaaggaatgggtcagtcaaaacatcatggattagc
tccactgctgtaaaagctgcagaagccatgctgtcaacatgctcatcaccatatgaaaaa
cggtgtttgttgcaaattctagcagcggctgattttggagatgcgggagctgcttcagct
tatttccaccggctctgctggaaaattagtttagctgaaccatctctgcgcaaagatgag
gatgcatatttaggaaatgaagttttgcatgatgcttctcttttagcggcacttgaaatg
aatggccggtgggaacatgctcgtagctgggcaaggcagcttgagataagtggtgcatct
tggaaagatgctgtccaccatgtgacagaagcacaggcagaagccatggtggttgaatgg
aaggaatatctttgggatgttcgagaagagagagctgctttatggggccattgccaaact
cttttccttagatattcttttcctccattgaaggcaggattatttttcctcagacatgct
gaggcaattgagaaagagattccggcgagagaattacatgaaatgctcctactttcactt
cagtggctaagtggcagcatgactaaatctccccctgtttatcctctacatcttctacga
gagattgagactagagtatggctcttggctgtggaatcagaagttcagtccaagcctgaa
ggtgaccttatcttatcaaactctatccataatatagtaactggaactagtgccagcatt
atagaacagactgcaaatgttattgcaaaaatggatgctcatataaatactatgcggtta
agagcttctgaaagaaacgcaatgagagagaacaacctgcctcatagccggcacttgcag
tttggtgattctcatagttcagttacgacagcaagcagtacaagaacaaaacgaaggtcc
aaaacctatttgcaaataagacgacctacggaaactatagaaaatagtaatgattctgat
gataacctcaattctccgaacaacattttgagcagcggagaagtatccaaaaatacacag
ataacagaggaaaatatgcagattgaagcatccgtttctggatgggaggaaaaagtgagg
cctgcagaagtggagagggctattctttctctactagagttcggacagataacagctgct
aaacagctccaacttaagctgtctccatcttatgtgccaccggagcttgtatttgttgat
gctgctttaaaggttgctgatctttcatctcccaatagtagtggagaaataaatttatca
gagctggatcatgaagttctttcagttgtccaatcactccctgcggtgagcaaagatcat
gctgatttgctgcaggttttggagtctttagcagcaaaatgtagtcaaggttgtgggcgt
ggactttgttggaggattatatcagttgttaagtctgcaaaagtattgggcctcacattt
tctgaagcatttgagaaacgacctattgaattgctacagttactttctctcaaagcacag
gagtctcttgaggaagccaaactcttggtgcagactcatgttatgtctgcaccaagcatt
gcacgaatacttgcagagtcttttctgaagggtctcttggctgcacatcgtgggggatac
atggattctcagagggaggaagggcctgccccacttttatggagattctctgacttcttg
aagtgggcagaactttgtccttcagaaccagaaattggtcatgctctgatgcgcttagtg
atgacggggcaagaaataccacatgcttgtgaggttgaacttctaattctttctcaccat
ttctacaaatcctcggcttgccttgatggagtcgatgttctcgttacccttgcagcaaac
agggtagaatcttatgtgtcagaaggagatttctcttgtttggctcgcttgataactggt
gttagcaatttccatgctttgaacttcattcttaatatccttatagaaaatggtcaacta
gatctcctacttcagaagtattctactgctgacactggttctgccacatctgaagcagtc
agaggattccgactgtctgttctcacatcattgaagctttttaaccctcatgaccttgat
gcatttgctacggtttacaaccattttgacatgaagcacgaaaccgcgtcacatcttgaa
ttccgatcaacccaattcatccatcaatggttctctcgccgctacagagatcgccaaacc
gaagacctactcgaagccatgcgctacatcatcgaatctgctgaagtctactcgactatt
gatgccggtcacaaaacctaccgagcttgtgctcgcgcttcgcttctctctctccaaatc
cgaatccctgacctcaactatcttgaactaaccgaaaccaacgctcgccgagctttagtt
gagcaatctcggttccaagaagccctaattgtagctgaagcctatgatttaaaccagcct
agtgaatgggctccagttttatggaacttgatgttaaagcctgacctcattgaagaattt
gtcgcagaatttgtcacagttcttcctttgcaaccgtcgatgcttctcgagttagcgaga
ttttataggtcggaagttgctgcgagaggagaccaatcacatttctcagtttggctttcg
cctggagggttacctgctgaatgggttaagcatttggggaggtcgtttaggtgtttgttg
aagaggactagggatttgagagtaagattgcaactggcaacaattgctactggttttggg
gatgtggttgattcttgcacgaaggtgttggacaaagttcctgagagtgctgggcctctt
atattaaggagaggccatggtggagcttatcttcctcttatgtag
DBGET
integrated database retrieval system
