Asparagus officinalis (garden asparagus): 109827452
Help
Entry
109827452 CDS
T05243
Name
(RefSeq) exosome complex component RRP4 homolog
KO
K03679
exosome complex component RRP4
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109827452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109827452
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
109827452
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
109827452
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
109827452
NCBI-ProteinID:
XP_020250049
LinkDB
All DBs
Position
Unknown
AA seq
309 aa
AA seq
DB search
MKEIPLQLSLSQTQRSRLRAALEKLQDLASKSTASVTVADTIPVNHEDGILKGHGTSEFN
EEVVATVCGVVERVNKLVYVRTLRARYIPEVGDIIVGRVLEIAPKRWRLEINFSQDAVLM
LSSMNLPDGIQRRRTAVDELNMRSIFEENDVVCAEVRGFQHDGSLQLQARSQKYGKLERG
QLLSVPSYLVKRRKQHFHHLEKYGVDLILGCNGFIWVGEHVEPKDNEMVEDHQKQEEFTP
LETRQHICRIANSIRLLSALGFNLSADKIVETAEASMFSNIAIKDILGAEFCVETAETEL
KRRVSKRRS
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaatcccgctgcagctatcactaagccaaacacagagatcgagactgcgagct
gctctcgagaaacttcaggatctcgcttcgaaatccacagcctctgtcaccgtcgccgac
acgatccccgtcaaccacgaagatggcatcctcaagggccatgggacgtcagagttcaat
gaagaagtggtggctacagtttgtggtgtggttgagcgagtgaacaaacttgtttatgtt
cgtacgcttagagctaggtacataccagaggttggagatattattgttggccgtgtcctt
gagattgctccaaaacgctggagattggaaataaatttcagtcaggatgcagtattgatg
ctttcatctatgaacttgccagatggtattcagagacgcagaactgctgttgatgaactc
aacatgcgtagcatctttgaagaaaatgatgttgtttgtgctgaagttcgtggatttcag
catgatgggagtttgcagctacaagcaagaagtcaaaagtatggaaagttagaaagaggt
caactgctctcagtcccatcatacttagttaaaagacgcaaacaacatttccaccatctt
gaaaaatatggtgtcgatctcattctaggctgcaacggtttcatttgggtcggtgaacac
gtagaacctaaagacaacgagatggtggaagatcatcagaaacaagaagaatttacacca
ttggaaacaaggcagcatatttgcaggattgccaattcgattcgtttgctttctgctttg
ggattcaatctttctgctgataaaattgtggagaccgctgaggctagtatgttttcaaat
atcgcgataaaagatattcttggagctgagttttgtgttgagactgcagagactgaactt
aagagaagagtttcgaagaggagaagctga
DBGET
integrated database retrieval system
