Asparagus officinalis (garden asparagus): 109827597
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Entry
109827597 CDS
T05243
Name
(RefSeq) FACT complex subunit SSRP1 isoform X1
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
aof
Asparagus officinalis (garden asparagus)
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
aof03000
]
109827597
03036 Chromosome and associated proteins [BR:
aof03036
]
109827597
Transcription factors [BR:
aof03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
109827597
Chromosome and associated proteins [BR:
aof03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
109827597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
POB3_N
SSrecog
Rttp106-like_middle
HMG_box
HMG_box_2
HMG_WDHD1
CDC45
YL1
MlaC
Ccdc124
Motif
Other DBs
NCBI-GeneID:
109827597
NCBI-ProteinID:
XP_020250197
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All DBs
Position
1:89633954..89646642
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AA seq
689 aa
AA seq
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MYKMPSPKSRGVREQVTQKLTGAKGEKSLEISHSLFFFLKSKSGRGAMSDGHLFNNILLG
GRGGTNPGQLRIHSGGIAWKKQGGGKVIEVEKRDILGMTWTKVPRTYQLGVRNKDGLFYK
FTGFREQDVSNLTSFIQKYIGVMPEEKQLSVSGRNWGEVDIDGNMLTFLVGSKQAFEVSL
ADVSQAQLQGKTDVYLEFHVDDTTGANEKDSLMDLSFHVPNSNTQFLGDENHPPAQVMLE
KIMAMADVGASGEGAVVTFDGIAVLTPRGRYSVELHFSFFRLQGQATDFKIQYSSIVRLF
VLPKSNQPHTLVVVTLDPPIRKGNTLYPHIVIQFETDTVVERDLEISEELLATKYKDRLT
ASYKDLIPEVFSKILRGLCGAKITRPSTFRSCQDGYAVKSSLKAEDGVLYPLEKAFFFLP
KPPTLIPYDEIMYVEFERHGAGGSSVSSHYFDLLVKLRSEQEHLFRNIQRNEYHNLFDFM
SGKGLKIMNLGDGQATSGVAAALQHDDDEAVDPHLERIRNLAGGEESDEEDEDFVAEKDD
GGSPTDDSGEEESDASESGDDKEKLVKKDSAKGVTATKKSSAKRKPKDGEEEGSKKRKQK
KKKDPNAPKRAMSGFMHFSNAERENIKKSNPGMAFTDVGRALGEKWKKMTAEEKEPYESM
AQADTKRYKEAMADYKSGTVNVGSSEDTE
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgtataaaatgccgagtcccaaatcgagaggagtgagagagcaagttactcaaaaactt
acgggagccaaaggcgagaaatctttagagatatcccactccctcttcttcttcttgaaa
tcgaagagtgggcggggagccatgagcgacggccacctcttcaataacattctcctcggc
ggccgcggagggactaaccctgggcagttgagaatacattcaggaggtatcgcatggaaa
aagcaaggaggtggaaaggttattgaggttgaaaaacgtgatatattgggcatgacttgg
acaaaagtacctagaacatatcaacttggggtgaggaataaagatggattgttttacaag
ttcacaggcttcagagagcaggatgtcagtaacttgacaagttttatacaaaaatatatt
ggagtaatgccagaagagaagcagctttcggtcagtggtcgtaactggggcgaagttgat
atagatggaaatatgctcacatttttggtaggctcaaagcaagcctttgaggtttctcta
gcagatgtttcacaagcacaattgcaaggcaaaactgatgtttacttggagttccatgtg
gatgacactactggagctaatgagaaagattcactgatggatttgagcttccatgttcct
aactctaacactcagtttttgggtgatgaaaatcatcctccagctcaagttatgctagaa
aaaattatggctatggccgatgttggtgcttctggtgaaggtgctgttgtaacatttgat
ggaatcgcagttcttacacctagaggaaggtacagtgttgaacttcatttttcattcttt
cggctccaaggacaggcaactgattttaaaatccagtacagcagtattgtccgacttttt
gtgctgccaaagtcaaatcaaccccatacgcttgttgttgttacccttgacccacctatc
cgcaaagggaacacactatacccacatattgtcattcaatttgagacagatactgtagta
gaaagggacttggagattagtgaggagctcttggctacaaaatacaaggataggttgact
gcatcatacaaggatcttatccctgaggtcttcagtaagatcttgcgtggtttatgtggt
gcgaaaattacaaggccaagtacatttcgaagttgtcaagatggatatgcagtgaaatcc
tcactgaaggctgaagatggagtgttgtatccacttgagaaggccttctttttccttcct
aaacccccaacacttattccttatgacgagattatgtatgtagagttcgagaggcacggt
gctggaggctcaagtgtgtcatctcactattttgatctccttgtaaaacttagaagcgag
caagaacatctatttaggaatatccagagaaatgaatatcataatcttttcgacttcatg
agcgggaagggtttgaagattatgaaccttggagatggacaagctacaagtggtgtagct
gctgctcttcagcatgacgatgatgaggctgttgatcctcatcttgaacgaataagaaat
ctggctggtggtgaggagagtgatgaggaggatgaagattttgttgctgaaaaggatgat
ggtggatctcctactgatgactctggagaggaggaatctgatgccagtgaaagtggagat
gacaaagaaaaactcgttaaaaaagattcagcaaaaggagttactgccactaagaaatcg
tctgcgaagaggaagcccaaggatggagaagaagaaggttcaaagaagagaaaacaaaag
aagaaaaaggatccgaatgcacctaaaagggcaatgtcaggattcatgcatttttcgaat
gctgaaagagagaatattaagaaaagcaatccagggatggcatttactgatgttgggagg
gctcttggagagaagtggaagaagatgactgctgaggagaaagagccatacgaatcaatg
gctcaggctgataccaaacgctataaggaggccatggctgattacaagagtggaacagta
aatgtgggttccagcgaggacaccgagtag
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