Asparagus officinalis (garden asparagus): 109827621
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Entry
109827621 CDS
T05243
Name
(RefSeq) pre-mRNA-processing protein 40C
KO
K12824
transcription elongation regulator 1
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109827621
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aof03041
]
109827621
Spliceosome [BR:
aof03041
]
Complex A
U1 snRNP components
U1 related factors
109827621
Complex B
109827621
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
WW_2
RhoGAP-FF1
Motif
Other DBs
NCBI-GeneID:
109827621
NCBI-ProteinID:
XP_020250227
LinkDB
All DBs
Position
Unknown
AA seq
1105 aa
AA seq
DB search
MSSLWQSEKMQASDSTATLQSQNSESPVPAPTAASPTLAVASSSPVPPVGEPVNGATTPV
SSTPTTNANAGSTVPTVLPGSSAPSETTPVALHNSPNEPTRDPVQAKFVSPAGYVVPAPS
FSYNLFPRVNSSAGSPQQSAMKLIPPMPAAALQPPVPGQSFGNSPSFSYNVFPHANTITA
SGQQFRPVTATSQLQLQGVKLTAASLQPPVPGQPMRLNPTFPRTFPQNIPRPAGQLSASS
NFSFGESVHQSMTDASDKSLNPNDGTSNVAVPEAGISSAEPISSKSVKTSSAIPASSSTD
STPLSVQSSSNIFAPTSASFMPRPGMSMSGSAADSSPSPLRPVVPFPAAPSNLASIAMAP
TRNVQQQTHSHYPLMSAMAPIAQSPWLHPPLTGGLPHAPFFPHAGANPSPFPLPIRGVSV
TSVPSPGVQPPGVSTAMHSDVLTSAESNPMSKVIVGPLPPGIDRDKEANDLHKDGETTKR
EEVDAWTAHKTESGTIYYYNSITGESTYNKPSSFKGELEKVANQSTPVTWEKIAGTNWTL
VTTNDGKKYYYDTMNKVSSWQIPSEVSEMKKNQESDASKGNMVQDENTNIVAEKVSAPIY
ISTPAMHTGGRDSMVVRPSGGQVSSSALDLIKKKLQEAGSPVTSTPLSPSAISTTELNGS
RAADAVAKGQQSMNSKDKAKDANGEANMSDSSSDSDDAESGPTKEECIIQFREMLKKRGV
APFSKWDKELPKIVFDPRFKAVPSHSARRSIFEHFVRTRAEEERKEKRAAQKAAIDGFKQ
LLEEVSEDIDHKTDYQTFKKKWGTDPRFEALDRKERMLLLNEKVLPLKKAADEKNLAART
AAFKSFKSMLRENKDITIGSRWSKVKDGLKSDPRYKSVKHEEREILFNEYLSELKAAEDE
AERTAKTKRDEHDKLKEREREMRKRKEREEQEMERIRVKVRRKEAISSYQALLVETIKDP
KASWTESKPKLEKDPQGRAANPDLSEADMEKLFRDHVKDLLERCAREYRFLLAEVITMEA
AAKVSDDGKNVLNSWTEAKRLLKPDARYSKMPRKERESLWIRYSDDMIRKHKPAADPKDK
SDRGGKDKSSADISRKSPRRSHGRR
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcactgtggcagtcagaaaagatgcaagcttcagattcaactgcaactcttcaa
tctcaaaattcagaatcgccggttcctgctccaactgcagcttccccaacattggctgtg
gcttcctcgtcaccagttccacctgttggagaaccagtaaatggtgcaaccactccagtt
tcatctactccaactactaatgctaatgctggttcaacagtacccacagttcttcctggc
tcttcagctccaagcgaaacaactccagtggctctccataattcaccaaatgagccaacg
cgagatcctgttcaggctaagtttgtttctccagcaggctatgttgtccctgcaccatct
ttttcctacaacttatttcctagggtgaattcttctgctgggagccctcaacaatcggct
atgaagttaattccgccaatgcctgctgctgctcttcagcctcctgtacctggacaatca
tttgggaatagtccatctttttcctataatgttttcccacatgctaatactatcactgca
tctggtcagcagttccgtcctgtcactgccaccagtcaactgcagttgcaaggtgtaaag
ttaactgctgcatccttgcaacctccagttccagggcaacctatgaggcttaatccgact
tttcctcgaacatttccacagaatattcctcgccctgcaggtcaactgtcagcatcaagc
aacttttcttttggtgagagcgtccaccaatccatgacagatgcatcagataaaagcctt
aaccccaatgatggtacatcaaatgttgctgtaccagaagccggaatttcatctgcagaa
ccaattagttctaaatctgtaaaaacatcttctgctatacctgcaagttcttctacagat
tctactccattatctgttcaaagttcttcaaacatttttgcgccaacctcagcatcattt
atgccccgccctgggatgtcaatgtctggatctgctgcagattcttctccttcgcctttg
agacctgttgtgccatttcccgctgcaccatcaaatttggcctctattgcaatggcacca
acgaggaatgttcagcaacaaactcattcccattatcctttgatgtctgccatggcccct
attgctcaatctccttggttgcatcctcctctaactggtggtttgccacatgcgccattt
ttcccgcatgctggtgccaatccttccccctttccattgccaatccggggcgtatctgta
acttcagttccttcaccaggtgttcagcctcctggtgtctccacagctatgcatagtgat
gtcctcaccagtgcagaatctaatcctatgagcaaagtgattgtaggaccactgccccca
ggcattgacagggataaagaagctaatgatctccacaaggatggggaaaccacaaagaga
gaagaggtggacgcatggacagcacataagacagagtctggtaccatatactactacaat
tccattacaggagaatcaacatacaataagccttccagttttaagggggagctggagaaa
gttgcaaatcagtcaactcctgttacatgggagaagattgctggtaccaattggacactg
gtaaccacaaatgatggcaagaagtattactatgataccatgaacaaggttagtagctgg
cagatcccttcagaggtttcagagatgaaaaagaatcaggaaagtgatgcctcaaaagga
aatatggttcaagacgaaaataccaatattgtagcagagaaagtatctgctcctatctat
ataagcactcctgctatgcacacagggggtcgtgattctatggtagttaggccttctggc
ggacaagtttcttcatctgcactggatctgattaagaagaagttgcaagaagcaggcagt
ccagttacatccacacctctctcaccttccgcgatctctactactgagctgaatggttca
agggcagctgatgctgtagctaagggtcagcaaagtatgaatagcaaagacaaagcaaaa
gatgctaatggggaagcaaatatgtcagattcctcgtctgattccgatgatgcagagagt
ggaccaactaaggaggagtgcattattcagttcagggaaatgcttaaaaaacggggagtt
gcaccattctcaaaatgggataaagagctaccgaagatagtttttgatccacgttttaag
gctgttcctagtcattcagctcggagatctatatttgagcactttgttcggacacgtgca
gaagaagagcgcaaagaaaaaagagcagctcagaaggccgcaattgatggttttaaacaa
ttgctagaagaagtgtcagaggatatagatcataaaacggactaccagacatttaaaaag
aaatggggcacggacccaaggttcgaggcgctagatcggaaggaacggatgcttcttttg
aatgaaaaggtgcttcctctaaagaaagctgctgacgagaaaaatctagctgcacgaact
gctgcatttaaaagctttaaatcgatgcttagggaaaataaagatattactataggtagc
cgctggtccaaagtgaaagatggcttgaaaagcgatcccaggtacaagagtgtgaagcat
gaagaaagggaaatcttgtttaatgagtatttatctgaactgaaagctgctgaagatgaa
gcagaacgaactgcaaagaccaaaagggatgaacatgataaattaaaggaaagggagagg
gaaatgcgaaaaagaaaagaacgggaagaacaagaaatggagagaattagggtgaaagtt
cgcagaaaggaagcaatatcttcgtatcaagccctgcttgtggaaacaatcaaagatcca
aaggcatcttggacggagtctaaaccaaaactagagaaagatcctcagggccgcgctgca
aatcctgatctaagtgaggccgatatggaaaagttatttcgtgatcatgttaaggacttg
ctcgagcgttgtgcgcgtgagtaccgttttttgcttgctgaagttataactatggaagct
gcggctaaagtgagtgatgatgggaagaatgtccttaattcttggacagaagccaaacgc
cttctgaagccagacgctaggtactccaagatgcctagaaaagaaagggagtctctctgg
atcagatactctgatgacatgatcaggaagcataaaccagcagctgatcccaaagataaa
tcagatagaggaggtaaagataaatcatcagctgatatctccagaaagtcaccaaggaga
tcacatggccggaggtaa
DBGET
integrated database retrieval system
