Asparagus officinalis (garden asparagus): 109828149
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Entry
109828149 CDS
T05243
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109828149
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aof03041
]
109828149
03009 Ribosome biogenesis [BR:
aof03009
]
109828149
Enzymes [BR:
aof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109828149
Spliceosome [BR:
aof03041
]
Complex A
U1 snRNP components
U1 related factors
109828149
Complex B
109828149
Ribosome biogenesis [BR:
aof03009
]
Eukaryotic type
Pre-60S particles
Helicases
109828149
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HAD_Pex22
Motif
Other DBs
NCBI-GeneID:
109828149
NCBI-ProteinID:
XP_020250772
LinkDB
All DBs
Position
1:complement(92547996..92576254)
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AA seq
495 aa
AA seq
DB search
MSRYDGRSGDPASYRDRRSDYGKGFNPSGRRETLSLAASDLDGLTPFEKNFYVESPLVTA
MTEDEVEEYRKKREITVEGSDVPKPIREFRDVGFPDYVMQEVHRAGFVEPTPIQAQGWPM
ALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILAPGDGPIVLVLAPTRELAVQIQQEA
TKFGASSKIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESHNTNLRRVTYLVL
DEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLYNPYKVVIGSEEL
KANHAIYQRVEIVTESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRTDGWPAL
SIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRI
GRTGRAGAKGTAYTFFTAANARFAKELINILQEAGQKVSPELAAMGRGAPPQAGGTGHGS
FRDRGRGLGSGRSWS
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgttacgacggccgctccggcgaccccgcatcctaccgcgaccgcagaagcgat
tacgggaagggattcaacccctcaggcaggagagagactttgtctctcgccgcttctgac
cttgacggattgaccccttttgaaaagaacttctatgttgagtctccgttggtgaccgcc
atgaccgaggatgaggttgaggagtatcgaaagaagagggaaattacggttgagggtagc
gatgttccgaagcccattagagagtttcgggatgttgggtttcccgattatgttatgcaa
gaagttcacagagctggatttgttgagcctacacctattcaagcacaaggatggcctatg
gctttgaagggtcgtgacctcattggtattgctgaaacgggatcaggaaagacacttgcc
tatctgctacctgcaatagttcatgtaaatgctcagccaatcttagcacctggggatggc
ccaattgttttagttttagcaccaacccgtgaacttgctgtccagatacaacaggaagcc
acaaaatttggggcatcatcaaagataaagaacacttgtatttatggtggggttccaaag
ggaccacaagttcgagatcttcagaaaggtgttgaaattgtgattgcaactccgggacgg
ctgattgatatgttagagtctcataatactaacttgcggagggtaacatatcttgtcttg
gatgaggcagatcgaatgcttgatatgggatttgaacctcagattaggaaaattgtttca
cagatccgtcctgatcggcagactctctattggagtgctacttggccaaaggaagttgaa
caacttgctagacaattcctttacaatccatacaaggtggttattggttccgaagagttg
aaagcaaatcatgcaatttatcagcgtgtggagattgtaactgagagtcagaaatataac
aaactggtcaagctactggaggatataatggatggaagccgtattttaatatttatggac
actaagaagggttgcgaccaaattacgaggcaattaagaactgatggctggcctgccctc
tcaattcatggtgacaagagccaggctgaaagggactgggtcctctcagagttcaaagca
gggaagagtcccatcatgactgcaacagatgttgctgctcgtggtttagatgtgaaggat
gtaaaatatgtgatcaactatgattttcctggatctttagaagattatgttcaccggata
ggtcggactgggagggctggggccaaaggaactgcatatactttctttactgcagccaat
gctaggtttgcaaaggaacttattaatattttgcaagaagctgggcagaaggtcagccct
gaactggctgccatgggccgaggtgccccacctcaggctggaggaacaggccatggtagt
tttcgtgatcgaggaagaggcttgggcagtggtcgttcatggagttga
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