Asparagus officinalis (garden asparagus): 109828335
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Entry
109828335 CDS
T05243
Name
(RefSeq) WD-40 repeat-containing protein MSI4-like isoform X1
KO
K10752
histone-binding protein RBBP4
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03082
ATP-dependent chromatin remodeling
aof03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
109828335
03083 Polycomb repressive complex
109828335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
aof03036
]
109828335
Chromosome and associated proteins [BR:
aof03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
109828335
Histone modification proteins
HAT complexes
HATB complex
109828335
HDAC complexes
Sin3A-HDAC complex
109828335
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
109828335
PRC2.2
109828335
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
109828335
Heterochromatin formation proteins
Other heterochromatin formation proteins
109828335
Chromatin remodeling factors
NuRD complex
109828335
NuRF complex
109828335
NuRF complex (fruit fly)
109828335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
Beta-prop_EIPR1
WD40_Prp19
Beta-prop_RIG_2nd
CAF1C_H4-bd
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_EML
Beta-prop_DCAF12
Beta-prop_WDR75_1st
WD40_RFWD3
Beta-prop_SCAP
DUF7640
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
109828335
NCBI-ProteinID:
XP_020250949
LinkDB
All DBs
Position
1:94084366..94120679
Genome browser
AA seq
458 aa
AA seq
DB search
MRKRSSSPTYERWKAQVPILYERFDEHRHDRPSPCCQWGIQLKETKDEKHQRLYFSEQTD
GKVPNTLVVANVEVFKSRVAAADHLSQFNEACSPFLKKEKAIAHPGKVCRIRELPKKSNI
VATHTHSPKVLIWDIDAQPNHHAVHDAAGSKPTLILEGHTQNAEYALSMCHTDSLVLSGG
QDTMVLLWSIQDYMSTLGGTASAKSPAALSENSSGQQAVEARNDKGMEAPMVAPRGCFRG
HNGAVEDVQFCPFSEQEFCSVGDDSCLKFWDARTGDRPTTSVEKACHGHMYCVDWNPHDV
NLIVTGSADSFVRMFDYRKIDGGSCITALHRLKGHKDSVLRVQWSPNKASVFGSAAKDGF
LNVWDHEKVGKKVSTGGLRMVQTPAGLIFQHAGHRGGKVTDFNWSISDPWTIASVSTDSG
SNPGGSLQIWCMSDLIHRPTEEVLEELNRFKDHISSCG
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgaggaagagatcatcgtcgccgacgtacgagcgttggaaggctcaagttccgatactc
tacgagcggttcgacgagcaccggcatgatcggccttctccctgctgccagtggggcata
caactaaaggaaacaaaagacgagaaacaccagcgtctttacttttctgagcagactgat
ggtaaagtgcctaatactcttgtcgttgcaaatgttgaagtgtttaaatcaagagttgcg
gcagcagaccacttgtcacagttcaatgaagcatgttctccctttctgaagaaggaaaaa
gccattgcacatcctggaaaggtctgtagaatcagagaacttcctaagaaaagtaacata
gtggcaacacatacacacagtcctaaagtactcatttgggacattgatgctcagcccaat
catcatgctgttcatgatgctgcaggatctaaacccactttgatattggaagggcacaca
cagaatgcagaatatgctctttctatgtgccacactgactcccttgtgctttctggaggg
caggacacaatggttctcttgtggagcatacaggattatatgtcaactctgggagggact
gcatctgcaaaatctcctgctgcattatctgagaactcaagtggtcagcaggctgtggaa
gctagaaatgacaagggcatggaagctccaatggttgcaccacgaggatgctttagaggg
cataatggtgcagttgaagatgtgcagttttgccctttcagtgaacaggaattctgtagt
gttggtgatgattcttgcctgaaattttgggatgctcggactggtgataggccaactaca
agtgttgagaaagcttgtcatggacatatgtactgtgtagattggaatccacatgatgta
aatctcatcgtgactgggtctgctgatagttttgtccgtatgtttgactatcggaagatc
gatggtggtagttgtataacagctttacatagacttaaaggccataaagattctgttctt
cgggttcagtggtctccgaataaagcatcagtttttgggagtgctgctaaagatggcttt
ttgaatgtatgggatcatgagaaggttggcaagaaagtatccactggtggtttgaggatg
gtgcagacacctgctggattaatctttcaacatgcaggacacagaggaggtaaagtgact
gatttcaactggagcatatctgatccgtggacaattgctagtgtatcaaccgattctggt
agcaatcctggtggaagcttacagatatggtgcatgagtgacttgatacacagacctacc
gaagaagtccttgaggagctgaatcggtttaaggaccacatcagttcttgtgggtaa
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